Conservation of cofitness between PP_3600 and PP_4757 in Pseudomonas putida KT2440

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3600 glucarate transporter 1.0 PP_4757 D-glucarate dehydratase / L-idarate epimerase 0.16 14
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_5043 D-galactarate permease 0.85 PfGW456L13_2480 Glucarate dehydratase (EC 4.2.1.40) low > 87
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3297 D-galactarate permease 0.85 Pf6N2E2_2116 Glucarate dehydratase (EC 4.2.1.40) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_07175 glucarate transporter 0.85 AO356_01240 glucarate dehydratase 0.26 47
Pseudomonas fluorescens SBW25 0.82 PFLU_RS04245 MFS transporter 0.87 PFLU_RS20930 glucarate dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS04245 MFS transporter 0.87 PFLU_RS20930 glucarate dehydratase low > 109
Pseudomonas sp. RS175 0.82 PFR28_00144 putative glucarate transporter 0.85 PFR28_01320 Glucarate dehydratase low > 88
Pseudomonas simiae WCS417 0.82 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.86 PS417_18895 glucarate dehydratase low > 88
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_05295 glucarate transporter 0.87 AO353_29040 glucarate dehydratase low > 101
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1108 D-galactarate permease 0.86 Pf1N1B4_71 Glucarate dehydratase (EC 4.2.1.40) low > 87
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_4226 D-galactonate transporter 0.82 Psyr_3120 D-glucarate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_4226 D-galactonate transporter 0.82 Psyr_3120 D-glucarate dehydratase low > 86
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.1209.1 D-galactarate permease 0.76 Xcc-8004.1208.1 Glucarate dehydratase (EC 4.2.1.40) low > 74
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS15805 glucarate transporter 0.76 HSERO_RS05800 glucarate dehydratase low > 78
Klebsiella michiganensis M5al 0.68 BWI76_RS22835 MFS transporter 0.75 BWI76_RS22825 glucarate dehydratase low > 92
Escherichia coli ECOR38 0.68 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.75 HEPCGN_19485 gudD glucarate dehydratase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00942 putative glucarate transporter 0.75 OHPLBJKB_00944 Glucarate dehydratase low > 73
Escherichia coli ECRC62 0.68 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.75 BNILDI_10615 gudD glucarate dehydratase low > 75
Escherichia coli BL21 0.68 ECD_02634 putative D-glucarate transporter 0.75 ECD_02632 D-glucarate dehydratase 1 low > 61
Escherichia coli ECOR27 0.68 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.75 NOLOHH_12110 gudD glucarate dehydratase low > 75
Escherichia fergusonii Becca 0.68 EFB2_01128 putative glucarate transporter 0.75 EFB2_01130 Glucarate dehydratase low > 86
Escherichia coli Nissle 1917 0.68 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.62 ECOLIN_RS15535 enolase C-terminal domain-like protein low > 55
Escherichia coli BW25113 0.68 b2789 gudP predicted D-glucarate transporter (NCBI) 0.75 b2787 gudD (D)-glucarate dehydratase 1 (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4843 D-glucarate permease 0.75 GFF4841 Glucarate dehydratase (EC 4.2.1.40) low > 78
Escherichia coli ECRC101 0.68 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.75 MCAODC_10760 gudD glucarate dehydratase low > 87
Escherichia coli ECRC100 0.68 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.75 OKFHMN_20235 gudD glucarate dehydratase 0.71 10
Escherichia coli ECRC98 0.68 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.75 JDDGAC_23900 gudD glucarate dehydratase low > 86
Escherichia coli ECRC102 0.68 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.75 NIAGMN_18005 gudD glucarate dehydratase — —
Escherichia coli ECRC99 0.68 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.75 KEDOAH_07895 gudD glucarate dehydratase — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS04075 MFS transporter 0.80 HER17_RS04085 glucarate dehydratase low > 75
Rahnella sp. WP5 0.67 EX31_RS03160 MFS transporter 0.77 EX31_RS03150 glucarate dehydratase low > 89
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS31870 MFS transporter 0.80 QEN71_RS32495 glucarate dehydratase low > 153
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2870 D-galactonate transporter 0.76 EX28DRAFT_2868 glucarate dehydratase low > 76
Erwinia tracheiphila SCR3 0.66 LU632_RS06310 MFS transporter 0.76 LU632_RS06320 gudD glucarate dehydratase low > 74
Ralstonia solanacearum GMI1000 0.66 RS_RS21080 MFS transporter 0.76 RS_RS05360 glucarate dehydratase low > 80
Enterobacter sp. TBS_079 0.66 MPMX20_03659 putative glucarate transporter 0.76 MPMX20_03657 Glucarate dehydratase low > 85
Ralstonia solanacearum PSI07 0.66 RPSI07_RS03475 MFS transporter 0.77 RPSI07_RS18880 glucarate dehydratase low > 81
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS20330 MFS transporter 0.79 ABZR87_RS10315 glucarate dehydratase low > 80
Ralstonia solanacearum UW163 0.66 UW163_RS19435 MFS transporter 0.77 UW163_RS12050 glucarate dehydratase — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS19740 MFS transporter 0.77 RALBFv3_RS14580 glucarate dehydratase low > 76
Pantoea sp. MT58 0.65 IAI47_04080 MFS transporter 0.75 IAI47_04090 glucarate dehydratase low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS17055 MFS transporter 0.79 DDA3937_RS17045 glucarate dehydratase low > 74
Azospirillum sp. SherDot2 0.65 MPMX19_02893 putative glucarate transporter 0.79 MPMX19_02890 Glucarate dehydratase low > 112
Dickeya dianthicola 67-19 0.64 HGI48_RS17110 MFS transporter 0.79 HGI48_RS17100 glucarate dehydratase low > 71
Dickeya dianthicola ME23 0.64 DZA65_RS18185 MFS transporter 0.79 DZA65_RS18175 glucarate dehydratase low > 75
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS29085 glucarate transporter 0.79 RR42_RS10625 glucarate dehydratase — —
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24150 glucarate transporter 0.80 BPHYT_RS20410 glucarate dehydratase low > 109
Paraburkholderia graminis OAS925 0.64 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.80 ABIE53_004432 glucarate dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.80 H281DRAFT_03815 D-glucarate dehydratase low > 103
Variovorax sp. SCN45 0.51 GFF7272 D-glucarate permease 0.78 GFF2907 Glucarate dehydratase (EC 4.2.1.40) 0.41 66

Not shown: 1 genomes with orthologs for PP_3600 only; 6 genomes with orthologs for PP_4757 only