| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4964 | | D-erythrose 4-phosphate dehydrogenase | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.50 | 1 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS28090 | | erythrose-4-phosphate dehydrogenase | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS28090 | | erythrose-4-phosphate dehydrogenase | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_13685 | | glyceraldehyde-3-phosphate dehydrogenase | 0.77 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.89 | Pf1N1B4_2398 | | D-erythrose-4-phosphate dehydrogenase | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_4656 | | D-erythrose-4-phosphate dehydrogenase | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.89 | AO353_07950 | | glyceraldehyde-3-phosphate dehydrogenase | 0.76 | AO353_14420 | | molecular chaperone DnaK | — | — |
| Pseudomonas sp. RS175 | 0.89 | PFR28_04187 | | D-erythrose-4-phosphate dehydrogenase | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | — | — |
| Pseudomonas simiae WCS417 | 0.88 | PS417_26435 | | glyceraldehyde-3-phosphate dehydrogenase | 0.78 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.88 | PfGW456L13_1065 | | D-erythrose-4-phosphate dehydrogenase | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas sp. S08-1 | 0.87 | OH686_10765 | | erythrose-4-phosphate dehydrogenase | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_4791 | | D-erythrose-4-phosphate dehydrogenase | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_4791 | | D-erythrose-4-phosphate dehydrogenase | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | — | — |
| Pseudomonas stutzeri RCH2 | 0.83 | Psest_0329 | | erythrose-4-phosphate dehydrogenase | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Dechlorosoma suillum PS | 0.59 | Dsui_1558 | | glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase | 0.54 | Dsui_2717 | | RNA polymerase-binding protein DksA | — | — |
| Marinobacter adhaerens HP15 | 0.56 | HP15_2912 | | glyceraldehyde 3-phosphate dehydrogenase, type I | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS03650 | | glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | — | — |
| Pantoea sp. MT58 | 0.51 | IAI47_03685 | | erythrose-4-phosphate dehydrogenase | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.49 | 33 |
| Pectobacterium carotovorum WPP14 | 0.51 | HER17_RS02685 | | erythrose-4-phosphate dehydrogenase | 0.65 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Rahnella sp. WP5 | 0.51 | EX31_RS21405 | | erythrose-4-phosphate dehydrogenase | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Escherichia coli ECRC98 | 0.51 | JDDGAC_23015 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC101 | 0.51 | MCAODC_09905 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli BL21 | 0.51 | ECD_02758 | | D-erythrose 4-phosphate dehydrogenase | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli ECRC99 | 0.51 | KEDOAH_08755 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECOR38 | 0.51 | HEPCGN_18695 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 85 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_03779 | | D-erythrose-4-phosphate dehydrogenase | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Escherichia coli ECRC102 | 0.51 | NIAGMN_17150 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli Nissle 1917 | 0.51 | ECOLIN_RS16265 | | erythrose-4-phosphate dehydrogenase | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC101 | 0.51 | OKFHMN_19385 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli BW25113 | 0.51 | b2927 | epd | D-erythrose 4-phosphate dehydrogenase (NCBI) | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.51 | BNILDI_09835 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECOR27 | 0.51 | NOLOHH_11295 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.51 | OHPLBJKB_00789 | | D-erythrose-4-phosphate dehydrogenase | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 73 |
| Dickeya dianthicola 67-19 | 0.50 | HGI48_RS18445 | | erythrose-4-phosphate dehydrogenase | 0.64 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dianthicola ME23 | 0.50 | DZA65_RS19580 | | erythrose-4-phosphate dehydrogenase | 0.64 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia fergusonii Becca | 0.50 | EFB2_00979 | | D-erythrose-4-phosphate dehydrogenase | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.50 | GFF3022 | | D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Enterobacter asburiae PDN3 | 0.50 | EX28DRAFT_2973 | | erythrose-4-phosphate dehydrogenase | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Dickeya dadantii 3937 | 0.50 | DDA3937_RS18520 | | erythrose-4-phosphate dehydrogenase | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Serratia liquefaciens MT49 | 0.50 | IAI46_21015 | | erythrose-4-phosphate dehydrogenase | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 86 |
| Shewanella amazonensis SB2B | 0.50 | Sama_2758 | | erythrose 4-phosphate dehydrogenase (RefSeq) | 0.63 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Klebsiella michiganensis M5al | 0.49 | BWI76_RS23985 | | erythrose-4-phosphate dehydrogenase | 0.64 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_00862 | | D-erythrose-4-phosphate dehydrogenase | 0.59 | MIT1002_03690 | | DnaK suppressor protein | — | — |
| Erwinia tracheiphila SCR3 | 0.49 | LU632_RS05535 | epd | erythrose-4-phosphate dehydrogenase | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Shewanella loihica PV-4 | 0.49 | Shew_0753 | | erythrose 4-phosphate dehydrogenase (RefSeq) | 0.63 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.49 | Shewana3_3352 | | erythrose 4-phosphate dehydrogenase (RefSeq) | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.48 | SO0931 | epd | D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.48 | CSW01_02530 | | D-erythrose-4-phosphate dehydrogenase | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | low | > 62 |
Not shown: 1 genomes with orthologs for PP_4964 only; 24 genomes with orthologs for PP_4693 only