Conservation of cofitness between PP_3600 and PP_3601 in Pseudomonas putida KT2440

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3600 glucarate transporter 1.0 PP_3601 galactarate dehydratase 0.80 1
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_5043 D-galactarate permease 0.86 PfGW456L13_5042 D-galactarate dehydratase (EC 4.2.1.42) low > 87
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_07175 glucarate transporter 0.84 AO356_07170 galactarate dehydratase low > 104
Pseudomonas fluorescens SBW25 0.82 PFLU_RS04245 MFS transporter 0.84 PFLU_RS04250 galactarate dehydratase low > 109
Pseudomonas sp. RS175 0.82 PFR28_00144 putative glucarate transporter 0.84 PFR28_00145 Galactarate dehydratase (L-threo-forming) 0.91 1
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS04245 MFS transporter 0.84 PFLU_RS04250 galactarate dehydratase 0.43 1
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3297 D-galactarate permease 0.85 Pf6N2E2_3296 D-galactarate dehydratase (EC 4.2.1.42) low > 103
Pseudomonas simiae WCS417 0.82 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.84 PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) 0.19 5
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_05295 glucarate transporter 0.82 AO353_05290 galactarate dehydratase low > 101
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1108 D-galactarate permease 0.85 Pf1N1B4_1107 D-galactarate dehydratase (EC 4.2.1.42) low > 87
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_4226 D-galactonate transporter 0.83 Psyr_4225 galactarate dehydratase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_4226 D-galactonate transporter 0.83 Psyr_4225 galactarate dehydratase low > 86
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.1209.1 D-galactarate permease 0.66 Xcc-8004.1206.1 D-galactarate dehydratase (EC 4.2.1.42) low > 74
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS15805 glucarate transporter 0.68 HSERO_RS15800 Galactarate dehydratase (EC 4.2.1.42) (from data) 0.81 3
Klebsiella michiganensis M5al 0.68 BWI76_RS22835 MFS transporter 0.62 BWI76_RS24840 galactarate dehydratase low > 92
Escherichia coli BL21 0.68 ECD_02634 putative D-glucarate transporter 0.62 ECD_02993 D-galactarate dehydrogenase 0.44 13
Escherichia fergusonii Becca 0.68 EFB2_01128 putative glucarate transporter 0.62 EFB2_00691 Galactarate dehydratase (L-threo-forming) low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00942 putative glucarate transporter 0.63 OHPLBJKB_00575 Galactarate dehydratase (L-threo-forming) low > 73
Escherichia coli ECOR27 0.68 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.62 NOLOHH_10135 garD galactarate dehydratase low > 75
Escherichia coli ECRC62 0.68 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.62 BNILDI_01395 garD galactarate dehydratase low > 75
Escherichia coli Nissle 1917 0.68 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.62 ECOLIN_RS17975 galactarate dehydratase — —
Escherichia coli ECOR38 0.68 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.62 HEPCGN_17190 garD galactarate dehydratase low > 87
Escherichia coli BW25113 0.68 b2789 gudP predicted D-glucarate transporter (NCBI) 0.62 b3128 garD (D)-galactarate dehydrogenase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4843 D-glucarate permease 0.62 GFF1534 D-galactarate dehydratase (EC 4.2.1.42) low > 78
Escherichia coli ECRC98 0.68 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.62 JDDGAC_21985 garD galactarate dehydratase low > 86
Escherichia coli ECRC100 0.68 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.62 OKFHMN_18355 garD galactarate dehydratase low > 80
Escherichia coli ECRC101 0.68 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.62 MCAODC_08865 garD galactarate dehydratase low > 87
Escherichia coli ECRC102 0.68 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.62 NIAGMN_16115 garD galactarate dehydratase — —
Escherichia coli ECRC99 0.68 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.62 KEDOAH_09795 garD galactarate dehydratase — —
Pectobacterium carotovorum WPP14 0.67 HER17_RS04075 MFS transporter 0.62 HER17_RS04070 galactarate dehydratase low > 75
Rahnella sp. WP5 0.67 EX31_RS03160 MFS transporter 0.62 EX31_RS07995 galactarate dehydratase low > 89
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS31870 MFS transporter 0.64 QEN71_RS33575 galactarate dehydratase low > 153
Erwinia tracheiphila SCR3 0.66 LU632_RS06310 MFS transporter 0.60 LU632_RS06305 garD galactarate dehydratase low > 74
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2870 D-galactonate transporter 0.62 EX28DRAFT_3184 galactarate dehydratase low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_03659 putative glucarate transporter 0.62 MPMX20_04037 Galactarate dehydratase (L-threo-forming) low > 85
Ralstonia solanacearum GMI1000 0.66 RS_RS21080 MFS transporter 0.63 RS_RS21090 galactarate dehydratase low > 80
Ralstonia solanacearum PSI07 0.66 RPSI07_RS03475 MFS transporter 0.63 RPSI07_RS03485 galactarate dehydratase low > 81
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS20330 MFS transporter 0.62 ABZR87_RS20320 galactarate dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS19740 MFS transporter 0.64 RALBFv3_RS19730 galactarate dehydratase low > 76
Ralstonia solanacearum UW163 0.66 UW163_RS19435 MFS transporter 0.64 UW163_RS19445 galactarate dehydratase — —
Pantoea sp. MT58 0.65 IAI47_04080 MFS transporter 0.62 IAI47_04075 galactarate dehydratase low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS17055 MFS transporter 0.62 DDA3937_RS17065 galactarate dehydratase low > 74
Azospirillum sp. SherDot2 0.65 MPMX19_02893 putative glucarate transporter 0.64 MPMX19_02889 Galactarate dehydratase (L-threo-forming) low > 112
Dickeya dianthicola ME23 0.64 DZA65_RS18185 MFS transporter 0.62 DZA65_RS18190 galactarate dehydratase low > 75
Dickeya dianthicola 67-19 0.64 HGI48_RS17110 MFS transporter 0.62 HGI48_RS17115 galactarate dehydratase low > 71
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS29085 glucarate transporter 0.67 RR42_RS29090 galactarate dehydrogenase low > 128
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24150 glucarate transporter 0.65 BPHYT_RS24160 D-galactarate dehydratase low > 109
Paraburkholderia graminis OAS925 0.64 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.65 ABIE53_006505 galactarate dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.65 H281DRAFT_05320 galactarate dehydratase low > 103
Variovorax sp. SCN45 0.51 GFF7272 D-glucarate permease 0.65 GFF2921 D-galactarate dehydratase (EC 4.2.1.42) low > 127

Not shown: 1 genomes with orthologs for PP_3600 only; 4 genomes with orthologs for PP_3601 only