Conservation of cofitness between PP_5338 and PP_0123 in Pseudomonas putida KT2440

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5338 aspartate ammonia-lyase 1.0 PP_0123 DNA polymerase I, 5 0.41 4
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_11090 aspartate ammonia-lyase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas sp. RS175 0.93 PFR28_04498 Aspartate ammonia-lyase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas simiae WCS417 0.93 PS417_28130 aspartate ammonia-lyase 0.79 PS417_00405 DNA polymerase I — —
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_09950 aspartate ammonia-lyase 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_5051 Aspartate ammonia-lyase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_5051 Aspartate ammonia-lyase 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. S08-1 0.88 OH686_13315 Aspartate ammonia-lyase 0.77 OH686_12215 DNA polymerase I — —
Pseudomonas stutzeri RCH2 0.84 Psest_4074 Aspartate ammonia-lyase 0.77 Psest_4219 DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS26135 aspartate ammonia-lyase 0.52 RR42_RS15050 DNA polymerase I 0.30 78
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_18450 aspartate ammonia-lyase 0.35 CA264_16535 DNA polymerase I — —
Shewanella amazonensis SB2B 0.58 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_03594 Aspartate ammonia-lyase 0.38 MPMX19_04869 DNA polymerase I low > 112
Dechlorosoma suillum PS 0.56 Dsui_3481 aspartate ammonia-lyase 0.52 Dsui_0459 DNA polymerase I low > 51
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS33820 aspartate ammonia-lyase 0.52 QEN71_RS17885 DNA polymerase I — —
Phocaeicola vulgatus CL09T03C04 0.55 HMPREF1058_RS06295 aspartate ammonia-lyase 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Bacteroides ovatus ATCC 8483 0.54 BACOVA_01069 aspartate ammonia-lyase 0.37 BACOVA_01357 DNA-directed DNA polymerase low > 94
Bacteroides thetaiotaomicron VPI-5482 0.54 BT2755 aspartate ammonia-lyase (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.54 HMPREF1181_RS11250 aspartate ammonia-lyase 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Agrobacterium fabrum C58 0.53 Atu3793 aspartate ammonia-lyase 0.41 Atu0110 DNA polymerase I — —
Rahnella sp. WP5 0.53 EX31_RS08965 aspartate ammonia-lyase 0.61 EX31_RS15905 DNA polymerase I low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_13620 aspartate ammonia-lyase 0.61 CSW01_00560 DNA polymerase I low > 62
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0565 aspA aspartate ammonia-lyase (RefSeq) 0.25 DvMF_1713 DNA polymerase I (RefSeq) — —
Variovorax sp. SCN45 0.52 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Escherichia coli Nissle 1917 0.52 ECOLIN_RS24045 aspartate ammonia-lyase 0.61 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC62 0.52 BNILDI_06795 aspA aspartate ammonia-lyase 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC101 0.52 OKFHMN_12430 aspA aspartate ammonia-lyase 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC99 0.52 KEDOAH_15735 aspA aspartate ammonia-lyase 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECOR27 0.52 NOLOHH_04695 aspA aspartate ammonia-lyase 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC102 0.52 NIAGMN_10275 aspA aspartate ammonia-lyase 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECOR38 0.52 HEPCGN_10655 aspA aspartate ammonia-lyase 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03904 Aspartate ammonia-lyase 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli BW25113 0.52 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC101 0.52 MCAODC_02940 aspA aspartate ammonia-lyase 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC98 0.52 JDDGAC_16065 aspA aspartate ammonia-lyase 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli BL21 0.52 ECD_04009 aspartate ammonia-lyase 0.61 ECD_03749 5 — —
Escherichia fergusonii Becca 0.52 EFB2_04396 Aspartate ammonia-lyase 0.60 EFB2_04753 DNA polymerase I — —
Variovorax sp. OAS795 0.52 ABID97_RS05930 aspartate ammonia-lyase 0.48 ABID97_RS09180 DNA polymerase I low > 91
Serratia liquefaciens MT49 0.52 IAI46_01480 aspartate ammonia-lyase 0.60 IAI46_24985 DNA polymerase I low > 86
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3336 aspartate ammonia-lyase 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Pectobacterium carotovorum WPP14 0.52 HER17_RS18835 aspartate ammonia-lyase 0.61 HER17_RS21470 DNA polymerase I — —
Klebsiella michiganensis M5al 0.52 BWI76_RS02330 aspartate ammonia-lyase 0.59 BWI76_RS00355 DNA polymerase I low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Enterobacter sp. TBS_079 0.52 MPMX20_00419 Aspartate ammonia-lyase 0.60 MPMX20_04601 DNA polymerase I low > 85
Dickeya dianthicola ME23 0.51 DZA65_RS02850 aspartate ammonia-lyase 0.59 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.51 HGI48_RS02695 aspartate ammonia-lyase 0.59 HGI48_RS21260 DNA polymerase I — —
Pantoea sp. MT58 0.51 IAI47_17320 aspartate ammonia-lyase 0.60 IAI47_00430 DNA polymerase I low > 76
Acinetobacter radioresistens SK82 0.51 MPMX26_01469 Aspartate ammonia-lyase 0.48 MPMX26_00574 DNA polymerase I low > 36
Dickeya dadantii 3937 0.51 DDA3937_RS02720 aspartate ammonia-lyase 0.59 DDA3937_RS00105 DNA polymerase I — —
Castellaniella sp019104865 MT123 0.46 ABCV34_RS07730 aspartate ammonia-lyase 0.47 ABCV34_RS02195 DNA polymerase I low > 48

Not shown: 3 genomes with orthologs for PP_5338 only; 43 genomes with orthologs for PP_0123 only