Conservation of cofitness between PFLU_RS29215 and PFLU_RS24640 in Pseudomonas fluorescens SBW25

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS29215 response regulator transcription factor 1.0 PFLU_RS24640 GntR family transcriptional regulator 0.96 2
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS29215 response regulator transcription factor 1.00 PFLU_RS24640 GntR family transcriptional regulator 0.30 49
Pseudomonas simiae WCS417 0.99 PS417_27535 chemotaxis protein CheY 0.94 PS417_22980 GntR family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_08995 chemotaxis protein CheY 0.85 AO353_04445 GntR family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_855 Autolysis response regulater LytR 0.85 PfGW456L13_4829 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family low > 87
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_12785 chemotaxis protein CheY 0.87 AO356_17555 GntR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.86 PFR28_04366 Sensory transduction protein LytR 0.87 PFR28_03511 HTH-type transcriptional repressor NagR low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_0063 Two-component response regulator AlgR 0.15 Psyr_3135 transcriptional regulator, GntR family — —
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_0063 Two-component response regulator AlgR 0.15 Psyr_3135 transcriptional regulator, GntR family low > 86
Lysobacter sp. OAE881 0.39 ABIE51_RS02955 LytTR family DNA-binding domain-containing protein 0.35 ABIE51_RS01625 GntR family transcriptional regulator low > 62
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.830.1 Autolysis response regulater LytR 0.50 Xcc-8004.953.1 Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family low > 74
Dechlorosoma suillum PS 0.30 Dsui_0109 response regulator of the LytR/AlgR family 0.17 Dsui_2210 transcriptional regulator low > 51
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_14425 lytT DNA-binding response regulator 0.33 OKGIIK_14355 mngR GntR family transcriptional regulator low > 52
Rhodanobacter denitrificans MT42 0.27 LRK55_RS07675 LytTR family DNA-binding domain-containing protein 0.33 LRK55_RS07595 GntR family transcriptional regulator low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF738 Autolysis response regulater LytR 0.18 GFF3371 Putative alkanesulfonate metabolism utilization regulator low > 90
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS07945 LytTR family DNA-binding domain-containing protein 0.33 LRK54_RS07865 GntR family transcriptional regulator low > 59
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS14825 LytTR family DNA-binding domain-containing protein 0.35 ABZR86_RS14705 GntR family transcriptional regulator low > 74
Ralstonia solanacearum PSI07 0.22 RPSI07_RS17365 DNA-binding response regulator 0.16 RPSI07_RS14660 GntR family transcriptional regulator low > 81
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS00120 DNA-binding response regulator 0.17 RALBFv3_RS02655 GntR family transcriptional regulator low > 76
Variovorax sp. SCN45 0.22 GFF3826 Response regulator receiver:LytTr DNA-binding region 0.18 GFF4945 probable GntR-family transcriptional regulator low > 127
Ralstonia solanacearum UW163 0.22 UW163_RS13450 DNA-binding response regulator 0.17 UW163_RS11070 GntR family transcriptional regulator — —
Ralstonia solanacearum GMI1000 0.21 RS_RS06780 DNA-binding response regulator 0.17 RS_RS10035 GntR family transcriptional regulator low > 80
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_0044 two component transcriptional regulator, LytTR family 0.38 Ga0059261_1638 transcriptional regulator, GntR family low > 68
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS18060 LytR family transcriptional regulator 0.17 HSERO_RS22990 transcriptional regulator low > 78
Alteromonas macleodii MIT1002 0.19 MIT1002_01189 Transcriptional regulatory protein YehT 0.21 MIT1002_03830 HTH-type transcriptional repressor YvoA low > 70
Dickeya dadantii 3937 0.19 DDA3937_RS16365 two-component system response regulator BtsR 0.15 DDA3937_RS16375 GntR family transcriptional regulator low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS10975 DNA-binding response regulator 0.16 CA265_RS01265 GntR family transcriptional regulator low > 88
Dickeya dianthicola ME23 0.18 DZA65_RS17550 two-component system response regulator BtsR 0.16 DZA65_RS17560 GntR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.18 HGI48_RS16465 two-component system response regulator BtsR 0.16 HGI48_RS16475 GntR family transcriptional regulator low > 71
Enterobacter sp. TBS_079 0.17 MPMX20_03092 Transcriptional regulatory protein BtsR 0.27 MPMX20_03075 HTH-type transcriptional repressor NagR low > 85
Rahnella sp. WP5 0.17 EX31_RS00780 two-component system response regulator BtsR 0.19 EX31_RS13550 GntR family transcriptional regulator low > 89
Escherichia coli ECRC99 0.16 KEDOAH_04250 btsR two-component system response regulator BtsR 0.24 KEDOAH_04065 yegW Uncharacterized HTH-type transcriptional regulator YegW — —
Escherichia coli BW25113 0.16 b2125 yehT orf, hypothetical protein (VIMSS) 0.24 b2101 yegW predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC102 0.16 NIAGMN_21850 btsR two-component system response regulator BtsR 0.24 NIAGMN_22030 yegW Uncharacterized HTH-type transcriptional regulator YegW — —
Escherichia fergusonii Becca 0.16 EFB2_01731 Transcriptional regulatory protein BtsR 0.24 EFB2_01756 HTH-type transcriptional repressor NagR low > 86
Escherichia coli ECRC98 0.16 JDDGAC_28005 btsR two-component system response regulator BtsR 0.24 JDDGAC_28195 yegW Uncharacterized HTH-type transcriptional regulator YegW low > 86
Enterobacter asburiae PDN3 0.16 EX28DRAFT_0437 two component transcriptional regulator, LytTR family 0.28 EX28DRAFT_0470 Transcriptional regulators low > 76
Escherichia coli ECOR27 0.16 NOLOHH_15235 btsR two-component system response regulator BtsR 0.24 NOLOHH_15425 yegW Uncharacterized HTH-type transcriptional regulator YegW low > 75
Escherichia coli BL21 0.16 ECD_02054 putative response regulator in two-component system withYehU 0.24 ECD_02029 putative DNA-binding transcriptional regulator — —
Escherichia coli Nissle 1917 0.16 ECOLIN_RS12450 two-component system response regulator BtsR 0.24 ECOLIN_RS12325 GntR family transcriptional regulator — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_01586 Transcriptional regulatory protein BtsR 0.24 OHPLBJKB_01609 HTH-type transcriptional repressor YvoA low > 73
Escherichia coli ECRC101 0.16 MCAODC_21245 btsR two-component system response regulator BtsR 0.24 MCAODC_21075 yegW Uncharacterized HTH-type transcriptional regulator YegW low > 87
Escherichia coli ECRC100 0.16 OKFHMN_23915 btsR two-component system response regulator BtsR 0.24 OKFHMN_24085 yegW Uncharacterized HTH-type transcriptional regulator YegW low > 80
Escherichia coli ECRC62 0.16 BNILDI_14185 btsR two-component system response regulator BtsR 0.24 BNILDI_14340 yegW Uncharacterized HTH-type transcriptional regulator YegW low > 75
Pectobacterium carotovorum WPP14 0.16 HER17_RS05370 two-component system response regulator BtsR 0.26 HER17_RS16070 GntR family transcriptional regulator low > 75
Escherichia coli ECOR38 0.16 HEPCGN_02640 btsR two-component system response regulator BtsR 0.24 HEPCGN_02770 mngR GntR family transcriptional regulator low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF3820 Two-component response-regulatory protein YehT 0.25 GFF3835 Uncharacterized HTH-type transcriptional regulator YegW low > 78
Bacteroides thetaiotaomicron VPI-5482 0.16 BT1457 two-component system response regulator (NCBI ptt file) 0.16 BT2103 transcriptional regulator (NCBI ptt file) low > 81
Klebsiella michiganensis M5al 0.16 BWI76_RS19470 DNA-binding response regulator 0.18 BWI76_RS01040 transcriptional regulator low > 92
Azospirillum sp. SherDot2 0.15 MPMX19_06239 Transcriptional regulatory protein BtsR 0.37 MPMX19_03609 HTH-type transcriptional repressor NagR low > 112

Not shown: 32 genomes with orthologs for PFLU_RS29215 only; 14 genomes with orthologs for PFLU_RS24640 only