Conservation of cofitness between PFLU_RS02430 and PFLU_RS23130 in Pseudomonas fluorescens SBW25

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.0 PFLU_RS23130 response regulator transcription factor 0.85 3
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 1.00 PFLU_RS23130 response regulator transcription factor low > 109
Pseudomonas simiae WCS417 0.98 PS417_02355 thiamine biosynthesis protein ThiC 1.00 PS417_21515 transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_13010 thiamine biosynthesis protein ThiC 0.96 AO353_02815 transcriptional regulator low > 101
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_0544 hydroxymethylpyrimidine synthase 0.89 Psyr_3709 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas fluorescens FW300-N2E2 0.95 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.94 Pf6N2E2_5704 Transcriptional regulatory protein PhoP low > 103
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_08810 thiamine biosynthesis protein ThiC 0.93 AO356_18965 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.95 Pf1N1B4_3483 Transcriptional regulatory protein PhoP low > 87
Pseudomonas sp. RS175 0.94 PFR28_05091 Phosphomethylpyrimidine synthase 0.91 PFR28_03244 Transcriptional regulatory protein PhoP low > 88
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.94 PfGW456L13_2011 Transcriptional regulatory protein PhoP low > 87
Pseudomonas putida KT2440 0.91 PP_4922 Phosphomethylpyrimidine synthase 0.88 PP_1186 two component system DNA-binding transcriptional dual regulator low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_0477 thiamine biosynthesis protein ThiC 0.80 Psest_3883 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Dyella japonica UNC79MFTsu3.2 0.75 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.52 ABZR86_RS18360 response regulator transcription factor low > 74
Lysobacter sp. OAE881 0.74 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.53 ABIE51_RS03940 response regulator transcription factor low > 62
Rhodanobacter sp. FW510-T8 0.74 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.51 OKGIIK_00635 ompR DNA-binding response regulator — —
Xanthomonas campestris pv. campestris strain 8004 0.73 Xcc-8004.1066.1 hypothetical protein 0.52 Xcc-8004.5008.1 Two-component system regulatory protein — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.46 HER17_RS11640 two-component system response regulator PhoP low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.45 DDA3937_RS11500 two-component system response regulator PhoP low > 74
Shewanella loihica PV-4 0.71 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.55 Shew_2348 two component transcriptional regulator (RefSeq) — —
Rahnella sp. WP5 0.71 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.51 EX31_RS24560 two-component system response regulator PhoP low > 89
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.53 B158DRAFT_1560 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 40
Escherichia fergusonii Becca 0.71 EFB2_04617 Phosphomethylpyrimidine synthase 0.50 EFB2_02845 Transcriptional regulatory protein PhoP low > 86
Escherichia coli ECRC62 0.71 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.50 BNILDI_19080 phoP two-component system response regulator PhoP low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.50 OHPLBJKB_02538 Transcriptional regulatory protein PhoP low > 73
Escherichia coli Nissle 1917 0.71 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.50 ECOLIN_RS06610 two-component system response regulator PhoP — —
Escherichia coli ECRC101 0.71 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.49 MCAODC_22355 phoP two-component system response regulator PhoP low > 87
Escherichia coli ECRC102 0.71 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.49 NIAGMN_24875 phoP two-component system response regulator PhoP — —
Escherichia coli ECRC98 0.71 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.49 JDDGAC_06635 phoP two-component system response regulator PhoP low > 86
Escherichia coli ECRC100 0.71 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.49 OKFHMN_00730 phoP two-component system response regulator PhoP low > 80
Escherichia coli ECOR27 0.71 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.50 NOLOHH_20915 phoP two-component system response regulator PhoP low > 75
Escherichia coli BW25113 0.71 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.50 b1130 phoP DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) low > 76
Escherichia coli ECRC99 0.71 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.49 KEDOAH_24815 phoP two-component system response regulator PhoP — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.49 EX28DRAFT_1800 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Escherichia coli ECOR38 0.71 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.50 HEPCGN_24200 phoP two-component system response regulator PhoP low > 87
Pantoea sp. MT58 0.71 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.48 IAI47_11930 two-component system response regulator PhoP low > 76
Shewanella amazonensis SB2B 0.71 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.53 Sama_1542 response regulator receiver protein (RefSeq) low > 62
Escherichia coli BL21 0.71 ECD_03871 phosphomethylpyrimidine synthase 0.50 ECD_01128 response regulator in two-component regulatory system with PhoQ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF4198 Thiamin biosynthesis protein ThiC 0.51 GFF3415 Transcriptional regulatory protein PhoP low > 78
Enterobacter sp. TBS_079 0.70 MPMX20_00217 Phosphomethylpyrimidine synthase 0.49 MPMX20_01811 Transcriptional regulatory protein PhoP low > 85
Dickeya dianthicola 67-19 0.70 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.45 HGI48_RS11545 two-component system response regulator PhoP low > 71
Serratia liquefaciens MT49 0.70 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.50 IAI46_10395 two-component system response regulator PhoP low > 86
Klebsiella michiganensis M5al 0.70 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.51 BWI76_RS11280 two-component system response regulator PhoP — —
Dickeya dianthicola ME23 0.70 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.45 DZA65_RS11880 two-component system response regulator PhoP low > 75
Erwinia tracheiphila SCR3 0.70 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.47 LU632_RS14590 phoP two-component system response regulator PhoP low > 74
Shewanella oneidensis MR-1 0.69 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.53 SO1946 phoP transcriptional regulatory protein PhoP (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.69 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.53 Shewana3_1724 two component transcriptional regulator (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase 0.47 MIT1002_01421 Transcriptional regulatory protein PhoP low > 70
Dinoroseobacter shibae DFL-12 0.63 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) 0.32 Dshi_1508 two component transcriptional regulator, winged helix family (RefSeq) — —

Not shown: 45 genomes with orthologs for PFLU_RS02430 only; 2 genomes with orthologs for PFLU_RS23130 only