Conservation of cofitness between OKFHMN_09385 and OKFHMN_13565 in Escherichia coli ECRC100

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC100 1.0 OKFHMN_09385 fimB integrase 1.0 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.64 20
Escherichia coli ECRC102 1.00 NIAGMN_07435 fimB integrase 1.00 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC98 1.00 JDDGAC_13020 fimB integrase 1.00 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR low > 86
Klebsiella michiganensis M5al 0.91 BWI76_RS05825 putative site specific integrase 0.96 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2648 Integrase 0.96 EX28DRAFT_4424 Transcriptional regulator — —
Pectobacterium carotovorum WPP14 0.75 HER17_RS04720 tyrosine-type recombinase/integrase 0.90 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS16520 tyrosine-type recombinase/integrase 0.90 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Rahnella sp. WP5 0.66 EX31_RS20945 tyrosine-type recombinase/integrase 0.89 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Serratia liquefaciens MT49 0.65 IAI46_05415 tyrosine-type recombinase/integrase 0.89 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Dickeya dianthicola 67-19 0.63 HGI48_RS14775 tyrosine-type recombinase/integrase 0.90 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Pseudomonas stutzeri RCH2 0.59 Psest_4016 Integrase 0.37 Psest_4191 Transcriptional regulator low > 67
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS02275 integrase arm-type DNA-binding domain-containing protein 0.42 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR low > 74
Dechlorosoma suillum PS 0.40 Dsui_0218 Integrase 0.35 Dsui_0823 transcriptional regulator low > 51
Pseudomonas sp. S08-1 0.40 OH686_21775 Phage integrase 0.36 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Dickeya dianthicola ME23 0.39 DZA65_RS04000 tyrosine-type recombinase/integrase 0.90 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Pseudomonas simiae WCS417 0.38 PS417_10250 integrase 0.36 PS417_27865 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.37 PFLU_RS09280 DUF4102 domain-containing protein 0.35 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS09280 DUF4102 domain-containing protein 0.35 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_11495 integrase 0.34 AO353_09315 LysR family transcriptional regulator low > 101
Shewanella sp. ANA-3 0.36 Shewana3_2953 phage integrase family protein (RefSeq) 0.26 Shewana3_3046 LysR family transcriptional regulator (RefSeq) low > 73
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_1748 Integrase 0.31 Ga0059261_0159 Transcriptional regulator low > 68
Shewanella oneidensis MR-1 0.35 SO1471 site-specific recombinase, phage integrase family (NCBI ptt file) 0.26 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS18370 integrase 0.34 RR42_RS17385 LysR family transcriptional regulator low > 128
Shewanella loihica PV-4 0.33 Shew_1267 phage integrase family protein (RefSeq) 0.26 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Rhodanobacter denitrificans MT42 0.32 LRK55_RS10445 tyrosine-type recombinase/integrase 0.43 LRK55_RS04545 LysR substrate-binding domain-containing protein low > 63
Lysobacter sp. OAE881 0.30 ABIE51_RS08660 site-specific integrase 0.41 ABIE51_RS05475 LysR substrate-binding domain-containing protein low > 62
Ralstonia solanacearum UW163 0.29 UW163_RS08775 integrase 0.34 UW163_RS08020 hydrogen peroxide-inducible genes activator — —
Ralstonia solanacearum PSI07 0.28 RPSI07_RS12430 DUF4102 domain-containing protein 0.34 RPSI07_RS11690 hydrogen peroxide-inducible genes activator low > 81
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_3004 Integrase 0.35 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator low > 87
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS10240 tyrosine-type recombinase/integrase 0.34 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Rhodopseudomonas palustris CGA009 0.24 TX73_011375 tyrosine-type recombinase/integrase 0.34 TX73_002235 LysR substrate-binding domain-containing protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_01203 Prophage integrase IntA 1.00 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Rhodospirillum rubrum S1H 0.24 Rru_A0354 Phage integrase (NCBI) 0.36 Rru_A0334 Transcriptional Regulator, LysR family (NCBI) low > 58
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS32385 integrase 0.33 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Alteromonas macleodii MIT1002 0.16 MIT1002_04073 Putative prophage CPS-53 integrase 0.26 MIT1002_01120 Morphology and auto-aggregation control protein low > 70
Azospirillum brasilense Sp245 0.13 AZOBR_RS30360 integrase 0.37 AZOBR_RS31340 LysR family transcriptional regulator low > 97
Dinoroseobacter shibae DFL-12 0.09 Dshi_3213 integrase family protein (RefSeq) 0.30 Dshi_0727 transcriptional regulator, LysR family (RefSeq) low > 64

Not shown: 1 genomes with orthologs for OKFHMN_09385 only; 57 genomes with orthologs for OKFHMN_13565 only