Conservation of cofitness between HSERO_RS23825 and HSERO_RS12590 in Herbaspirillum seropedicae SmR1

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS23825 hypothetical protein 1.0 HSERO_RS12590 ethanolamin permease 0.47 12
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.80 BPHYT_RS00100 ethanolamine permease low > 109
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.80 ABIE53_000359 ethanolamine permease low > 113
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.80 H281DRAFT_02303 ethanolamine:proton symporter, EAT family low > 103
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.12 ABZR87_RS13545 amino acid permease low > 80
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.81 QEN71_RS00030 ethanolamine permease low > 153
Ralstonia solanacearum GMI1000 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.12 RS_RS08000 amino acid permease low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.11 RPSI07_RS15760 amino acid permease low > 81
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.12 RALBFv3_RS01725 amino acid permease low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.12 UW163_RS15035 amino acid permease — —
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.77 RR42_RS21315 ethanolamine permease low > 128
Escherichia coli ECOR27 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 NOLOHH_20135 puuP putrescine/proton symporter PuuP low > 75
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.69 Pf1N1B4_2672 Ethanolamine permease low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.09 OHPLBJKB_00332 putative fructoselysine/psicoselysine transporter FrlA low > 73
Escherichia coli BW25113 0.20 b2324 b2324 putative peptidase (VIMSS) 0.09 b0260 ykfD putative amino acid/amine transport protein (VIMSS) low > 76
Escherichia coli ECRC101 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 MCAODC_07700 frlA fructoselysine/psicoselysine transporter low > 87
Escherichia coli ECRC99 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 KEDOAH_10970 frlA fructoselysine/psicoselysine transporter — —
Escherichia coli ECRC100 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 OKFHMN_17170 frlA fructoselysine/psicoselysine transporter low > 80
Escherichia coli ECRC98 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 JDDGAC_20800 frlA fructoselysine/psicoselysine transporter low > 86
Escherichia coli ECRC62 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 BNILDI_18285 puuP putrescine/proton symporter PuuP low > 75
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.69 AO353_06565 ethanolamine permease low > 101
Escherichia coli ECRC102 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 NIAGMN_14940 frlA fructoselysine/psicoselysine transporter — —
Escherichia coli BL21 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme 0.09 ECD_03221 putative fructoselysine transporter low > 61
Pseudomonas stutzeri RCH2 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.23 Psest_0670 ethanolamine permease low > 67
Klebsiella michiganensis M5al 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.71 BWI76_RS06010 ethanolamine permease low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.69 PfGW456L13_1341 Ethanolamine permease low > 87
Pseudomonas sp. S08-1 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.68 OH686_07700 ethanolamine permease low > 80
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.69 AO356_15220 ethanolamine permease low > 104
Pseudomonas sp. RS175 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.69 PFR28_03886 putative amino acid permease YhdG low > 88
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.69 Pf6N2E2_4978 Ethanolamine permease low > 103
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.68 Psyr_1835 ethanolamine:proton symporter, EAT family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.68 Psyr_1835 ethanolamine:proton symporter, EAT family low > 86
Pseudomonas simiae WCS417 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.68 PS417_08275 ethanolamin permease low > 88
Pseudomonas putida KT2440 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.24 PP_0544 Ethanolamine transporter low > 96
Pantoea sp. MT58 0.16 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 IAI47_14900 ethanolamine permease low > 76
Dickeya dadantii 3937 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 DDA3937_RS19380 ethanolamine permease low > 74
Dickeya dianthicola ME23 0.16 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 DZA65_RS20600 ethanolamine permease low > 75
Dickeya dianthicola 67-19 0.16 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.67 HGI48_RS19510 ethanolamine permease low > 71
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.68 PFLU_RS08215 ethanolamine permease low > 109
Pseudomonas fluorescens SBW25 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.68 PFLU_RS08215 ethanolamine permease low > 109
Rahnella sp. WP5 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.74 EX31_RS20130 ethanolamine permease low > 89
Erwinia tracheiphila SCR3 0.14 LU632_RS07800 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.09 LU632_RS03070 aroP aromatic amino acid transporter AroP low > 74
Castellaniella sp019104865 MT123 0.13 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.07 ABCV34_RS10320 amino acid permease low > 48
Variovorax sp. OAS795 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.68 ABID97_RS19505 ethanolamine permease low > 91
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS15340 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD 0.09 A4249_RS05420 amino acid permease low > 48
Acinetobacter radioresistens SK82 0.09 MPMX26_02642 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.27 MPMX26_01769 putative amino acid permease YhdG — —
Caulobacter crescentus NA1000 Δfur 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.10 CCNA_00435 amino acid transporter low > 67
Caulobacter crescentus NA1000 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.10 CCNA_00435 L-proline transporter (from data) low > 66

Not shown: 17 genomes with orthologs for HSERO_RS23825 only; 18 genomes with orthologs for HSERO_RS12590 only