Conservation of cofitness between HSERO_RS09540 and HSERO_RS10595 in Herbaspirillum seropedicae SmR1

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09540 diguanylate cyclase 1.0 HSERO_RS10595 competence protein ComJ 0.25 9
Castellaniella sp019104865 MT123 0.39 ABCV34_RS04665 GGDEF domain-containing protein 0.50 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS02060 diguanylate cyclase 0.59 BPHYT_RS06880 competence protein ComJ low > 109
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS00990 phosphodiesterase 0.62 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_4208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.34 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_3740 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.34 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_02445 diguanylate phosphodiesterase 0.34 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.36 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.36 Psyr_4772 Protein of unknown function DUF519 low > 86
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS35575 diguanylate cyclase 0.56 RR42_RS09005 competence protein ComJ low > 128
Pseudomonas simiae WCS417 0.35 PS417_09320 diguanylate phosphodiesterase 0.34 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5779 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.34 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.34 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.34 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_19330 diguanylate phosphodiesterase 0.34 AO356_08990 lactate dehydrogenase low > 104
Pseudomonas sp. RS175 0.35 PFR28_03170 hypothetical protein 0.33 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS22805 phosphodiesterase 0.58 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Acidovorax sp. GW101-3H11 0.34 Ac3H11_1101 diguanylate cyclase/phosphodiesterase 0.39 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Ralstonia solanacearum PSI07 0.34 RPSI07_RS01135 phosphodiesterase 0.58 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Variovorax sp. SCN45 0.33 GFF6204 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) 0.43 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Shewanella oneidensis MR-1 0.32 SO0555 conserved hypothetical protein (NCBI ptt file) 0.39 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS13860 phosphodiesterase 0.33 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS13575 GGDEF domain-containing protein 0.34 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 63
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13885 eAL phosphodiesterase 0.33 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 52
Shewanella sp. ANA-3 0.31 Shewana3_0554 diguanylate cyclase/phosphodiesterase (RefSeq) 0.39 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.31 Sama_3153 putative diguanylate phosphodiesterase (RefSeq) 0.38 Sama_3563 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.29 Shew_0436 diguanylate cyclase/phosphodiesterase (RefSeq) 0.39 Shew_3648 hypothetical protein (RefSeq) low > 60
Agrobacterium fabrum C58 0.21 Atu0826 hypothetical protein 0.34 Atu1135 hypothetical protein low > 89
Rhizobium sp. OAE497 0.18 ABIE40_RS04540 EAL domain-containing protein 0.32 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 107
Sinorhizobium meliloti 1021 0.18 SMc00033 hypothetical protein 0.31 SMc00608 hypothetical protein low > 103
Azospirillum sp. SherDot2 0.14 MPMX19_00227 hypothetical protein 0.34 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Magnetospirillum magneticum AMB-1 0.14 AMB_RS05620 GGDEF domain-containing protein 0.34 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 64
Rhodospirillum rubrum S1H 0.14 Rru_A3230 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) 0.28 Rru_A1938 Protein of unknown function DUF519 (NCBI) low > 58

Not shown: 2 genomes with orthologs for HSERO_RS09540 only; 47 genomes with orthologs for HSERO_RS10595 only