Conservation of cofitness between HSERO_RS22035 and HSERO_RS04830 in Herbaspirillum seropedicae SmR1

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 1.0 HSERO_RS04830 alcohol dehydrogenase 0.31 6
Escherichia coli ECRC101 0.64 MCAODC_16100 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 MCAODC_16575 adhP alcohol dehydrogenase AdhP low > 87
Escherichia coli ECRC100 0.64 OKFHMN_02155 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 OKFHMN_01365 adhP alcohol dehydrogenase AdhP — —
Escherichia coli ECOR27 0.64 NOLOHH_19870 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 NOLOHH_19040 adhP alcohol dehydrogenase AdhP low > 75
Escherichia coli BW25113 0.64 b1344 ydaO predicted C32 tRNA thiolase (NCBI) 0.36 b1478 adhP alcohol dehydrogenase (VIMSS) low > 76
Escherichia coli BL21 0.64 ECD_01321 tRNA s(2)C32 thioltransferase, iron sulfur cluster protein 0.36 ECD_01436 ethanol-active dehydrogenase/acetaldehyde-active reductase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_02337 tRNA-cytidine(32) 2-sulfurtransferase 0.36 OHPLBJKB_02239 Alcohol dehydrogenase, propanol-preferring low > 73
Escherichia coli ECRC102 0.64 NIAGMN_26325 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 NIAGMN_25495 adhP alcohol dehydrogenase AdhP — —
Escherichia coli ECRC62 0.64 BNILDI_18020 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 BNILDI_17525 adhP alcohol dehydrogenase AdhP low > 75
Escherichia coli ECOR38 0.64 HEPCGN_26005 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 HEPCGN_26430 adhP alcohol dehydrogenase AdhP low > 87
Escherichia coli ECRC99 0.64 KEDOAH_26600 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 KEDOAH_27075 adhP alcohol dehydrogenase AdhP — —
Escherichia coli ECRC98 0.64 JDDGAC_04715 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 JDDGAC_03855 adhP alcohol dehydrogenase AdhP low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS08065 tRNA 2-thiocytidine(32) synthetase TtcA 0.36 ECOLIN_RS08520 alcohol dehydrogenase AdhP — —
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1007 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.37 EX28DRAFT_1101 Zn-dependent alcohol dehydrogenases low > 76
Pantoea sp. MT58 0.64 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.32 IAI47_08620 alcohol dehydrogenase AdhP low > 76
Escherichia fergusonii Becca 0.64 EFB2_02583 tRNA-cytidine(32) 2-sulfurtransferase 0.36 EFB2_02513 Alcohol dehydrogenase, propanol-preferring low > 86
Serratia liquefaciens MT49 0.63 IAI46_13420 tRNA 2-thiocytidine(32) synthetase TtcA 0.35 IAI46_12310 alcohol dehydrogenase AdhP low > 86
Klebsiella michiganensis M5al 0.63 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.35 BWI76_RS13800 zinc-dependent alcohol dehydrogenase low > 92
Enterobacter sp. TBS_079 0.63 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.37 MPMX20_02371 Alcohol dehydrogenase, propanol-preferring low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF2648 tRNA(Cytosine32)-2-thiocytidine synthetase 0.35 GFF2557 Alcohol dehydrogenase (EC 1.1.1.1) low > 78
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.23 Pf6N2E2_1522 Alcohol dehydrogenase (EC 1.1.1.1) low > 103
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 0.22 Pf1N1B4_4176 Alcohol dehydrogenase (EC 1.1.1.1) low > 87
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.24 AO353_19865 alcohol dehydrogenase low > 101
Pseudomonas sp. RS175 0.60 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.22 PFR28_01972 putative alcohol dehydrogenase AdhA low > 88
Dechlorosoma suillum PS 0.60 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.70 Dsui_2228 Zn-dependent alcohol dehydrogenase low > 51
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.68 RR42_RS34260 Alcohol dehydrogenase (EC 1.1.1.1) (from data) low > 128
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.69 ABZR87_RS03500 alcohol dehydrogenase AdhP low > 80
Ralstonia solanacearum PSI07 0.59 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 RPSI07_RS09450 alcohol dehydrogenase AdhP low > 81
Pseudomonas putida KT2440 0.59 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.35 PP_3839 short-chain alcohol dehydrogenase low > 96
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.22 PFLU_RS20115 zinc-dependent alcohol dehydrogenase family protein low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.22 PFLU_RS20115 zinc-dependent alcohol dehydrogenase family protein low > 109
Ralstonia solanacearum UW163 0.59 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 UW163_RS05800 alcohol dehydrogenase AdhP — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.68 RALBFv3_RS07825 alcohol dehydrogenase AdhP low > 76
Ralstonia solanacearum GMI1000 0.59 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.67 RS_RS15725 alcohol dehydrogenase AdhP low > 80
Castellaniella sp019104865 MT123 0.56 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.69 ABCV34_RS02710 alcohol dehydrogenase AdhP low > 48
Erwinia tracheiphila SCR3 0.56 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.36 LU632_RS00630 adhP alcohol dehydrogenase AdhP low > 74
Variovorax sp. SCN45 0.56 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.23 GFF6951 Alcohol dehydrogenase (EC 1.1.1.1) low > 127
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS16485 tRNA 2-thiocytidine(32) synthetase TtcA 0.67 ABZR86_RS04465 alcohol dehydrogenase AdhP low > 74
Rhodanobacter denitrificans MT42 0.53 LRK55_RS10320 tRNA 2-thiocytidine(32) synthetase TtcA 0.20 LRK55_RS01085 zinc-dependent alcohol dehydrogenase family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS10680 tRNA 2-thiocytidine(32) synthetase TtcA 0.20 LRK54_RS01320 zinc-dependent alcohol dehydrogenase family protein low > 59
Dinoroseobacter shibae DFL-12 0.46 Dshi_0330 PP-loop domain protein (RefSeq) 0.63 Dshi_0931 Alcohol dehydrogenase GroES domain protein (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.45 SMc00534 C32 tRNA thiolase 0.83 SMa1296 alcohol dehydrogenase low > 103
Rhizobium sp. OAE497 0.45 ABIE40_RS10230 tRNA 2-thiocytidine(32) synthetase TtcA 0.22 ABIE40_RS22235 zinc-dependent alcohol dehydrogenase family protein low > 107
Agrobacterium fabrum C58 0.43 Atu1858 hypothetical protein 0.84 Atu0626 alcohol dehydrogenase low > 89

Not shown: 35 genomes with orthologs for HSERO_RS22035 only; 7 genomes with orthologs for HSERO_RS04830 only