Conservation of cofitness between HSERO_RS09540 and HSERO_RS04345 in Herbaspirillum seropedicae SmR1

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09540 diguanylate cyclase 1.0 HSERO_RS04345 membrane protein 0.26 8
Castellaniella sp019104865 MT123 0.39 ABCV34_RS04665 GGDEF domain-containing protein 0.58 ABCV34_RS08895 NAD(P)/FAD-dependent oxidoreductase low > 48
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS02060 diguanylate cyclase 0.61 BPHYT_RS33560 membrane protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02115 diguanylate cyclase/phosphodiesterase 0.61 H281DRAFT_06012 hypothetical protein low > 103
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS00990 phosphodiesterase 0.64 QEN71_RS15210 NAD(P)/FAD-dependent oxidoreductase low > 153
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_4208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.45 PfGW456L13_1077 FIG00953568: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_3740 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.47 Pf1N1B4_2411 FIG00953568: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_02445 diguanylate phosphodiesterase 0.46 AO353_07855 hypothetical protein low > 101
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.45 Psyr_0515 HI0933-like protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.45 Psyr_0515 HI0933-like protein low > 86
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS35575 diguanylate cyclase 0.63 RR42_RS14990 membrane protein low > 128
Pseudomonas simiae WCS417 0.35 PS417_09320 diguanylate phosphodiesterase 0.47 PS417_26375 membrane protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5779 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.46 Pf6N2E2_4672 FIG00953568: hypothetical protein low > 103
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.46 PFLU_RS28025 NAD(P)/FAD-dependent oxidoreductase low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.46 PFLU_RS28025 NAD(P)/FAD-dependent oxidoreductase low > 109
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_19330 diguanylate phosphodiesterase 0.46 AO356_13765 hypothetical protein low > 104
Pseudomonas sp. RS175 0.35 PFR28_03170 hypothetical protein 0.47 PFR28_04173 hypothetical protein low > 88
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS22805 phosphodiesterase 0.60 ABZR87_RS15620 NAD(P)/FAD-dependent oxidoreductase low > 80
Acidovorax sp. GW101-3H11 0.34 Ac3H11_1101 diguanylate cyclase/phosphodiesterase 0.57 Ac3H11_3253 NAD(FAD)-utilizing dehydrogenases low > 79
Ralstonia solanacearum PSI07 0.34 RPSI07_RS01135 phosphodiesterase 0.63 RPSI07_RS13540 NAD(P)/FAD-dependent oxidoreductase low > 81
Variovorax sp. SCN45 0.33 GFF6204 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) 0.57 GFF4713 Uncharacterized protein YhiN low > 127
Shewanella oneidensis MR-1 0.32 SO0555 conserved hypothetical protein (NCBI ptt file) 0.48 SO0054 conserved hypothetical protein TIGR00275 (NCBI ptt file) low > 76
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS13860 phosphodiesterase 0.50 LRK54_RS14680 NAD(P)/FAD-dependent oxidoreductase low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS13575 GGDEF domain-containing protein 0.50 LRK55_RS14395 NAD(P)/FAD-dependent oxidoreductase low > 63
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13885 eAL phosphodiesterase 0.52 OKGIIK_03505 yhiN NAD(P)/FAD-dependent oxidoreductase low > 52
Shewanella sp. ANA-3 0.31 Shewana3_0554 diguanylate cyclase/phosphodiesterase (RefSeq) 0.48 Shewana3_0055 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.31 Sama_3153 putative diguanylate phosphodiesterase (RefSeq) 0.47 Sama_0064 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.29 Shew_0436 diguanylate cyclase/phosphodiesterase (RefSeq) 0.48 Shew_3802 hypothetical protein (RefSeq) low > 60
Agrobacterium fabrum C58 0.21 Atu0826 hypothetical protein 0.51 Atu0603 hypothetical protein low > 89
Rhizobium sp. OAE497 0.18 ABIE40_RS04540 EAL domain-containing protein 0.51 ABIE40_RS03215 NAD(P)/FAD-dependent oxidoreductase low > 107
Sinorhizobium meliloti 1021 0.18 SMc00033 hypothetical protein 0.54 SMc00763 hypothetical protein low > 103
Magnetospirillum magneticum AMB-1 0.14 AMB_RS05620 GGDEF domain-containing protein 0.48 AMB_RS17480 NAD(P)/FAD-dependent oxidoreductase low > 64

Not shown: 3 genomes with orthologs for HSERO_RS09540 only; 55 genomes with orthologs for HSERO_RS04345 only