Conservation of cofitness between HSERO_RS08590 and HSERO_RS02620 in Herbaspirillum seropedicae SmR1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS02620 cobalt transporter 0.34 6
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.63 RR42_RS30535 cobalt transporter low > 128
Dechlorosoma suillum PS 0.47 Dsui_0824 pseudouridine synthase family protein 0.16 Dsui_0813 cation diffusion facilitator family transporter low > 51
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.13 ABID97_RS24945 cation diffusion facilitator family transporter low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.16 GFF2069 Cobalt-zinc-cadmium resistance protein low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.15 GFF1671 Cobalt-zinc-cadmium resistance protein low > 90
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12445 rRNA pseudouridine synthase 0.22 AMB_RS05165 cation transporter — —
Erwinia tracheiphila SCR3 0.28 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.16 LU632_RS21845 fieF CDF family cation-efflux transporter FieF low > 74
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.17 CCNA_03756 cation efflux family transporter — —
Caulobacter crescentus NA1000 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.17 CCNA_03756 cation efflux family transporter low > 66
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.18 Shewana3_0255 cation diffusion facilitator family transporter (RefSeq) low > 73
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 NIAGMN_11590 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.17 ECD_03800 ferrous iron and zinc transporter low > 61
Escherichia coli ECRC99 0.26 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 KEDOAH_14320 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.17 ECOLIN_RS22550 CDF family cation-efflux transporter FieF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.17 OHPLBJKB_04136 Ferrous-iron efflux pump FieF low > 73
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 MCAODC_04335 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.17 EFB2_04703 Ferrous-iron efflux pump FieF low > 86
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 NOLOHH_05970 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 JDDGAC_17460 fieF CDF family cation-efflux transporter FieF low > 86
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.17 b3915 fieF ferrous iron efflux protein F (NCBI) low > 76
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 HEPCGN_12480 fieF CDF family cation-efflux transporter FieF low > 87
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 BNILDI_05555 fieF CDF family cation-efflux transporter FieF low > 75
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.17 OKFHMN_13835 fieF CDF family cation-efflux transporter FieF low > 80
Pectobacterium carotovorum WPP14 0.26 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.19 HER17_RS00720 CDF family cation-efflux transporter FieF low > 75
Rahnella sp. WP5 0.26 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.20 EX31_RS10790 cation diffusion facilitator family transporter low > 89
Dickeya dadantii 3937 0.26 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.19 DDA3937_RS00840 CDF family cation-efflux transporter FieF low > 74
Pantoea sp. MT58 0.26 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.18 IAI47_00775 CDF family cation-efflux transporter FieF low > 76
Dickeya dianthicola ME23 0.26 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.18 DZA65_RS21580 CDF family cation-efflux transporter FieF low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.18 HGI48_RS20535 CDF family cation-efflux transporter FieF low > 71
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.19 IAI46_24650 CDF family cation-efflux transporter FieF low > 86
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.17 Sama_3430 cation efflux family protein (RefSeq) low > 62
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.17 MPMX20_04553 Ferrous-iron efflux pump FieF low > 85
Klebsiella michiganensis M5al 0.24 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.59 BWI76_RS13865 cation diffusion facilitator family transporter — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.53 EX28DRAFT_3666 cation diffusion facilitator family transporter low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.17 GFF2282 Cobalt-zinc-cadmium resistance protein low > 78
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.15 CSW01_13580 cation-efflux pump FieF low > 62
Shewanella loihica PV-4 0.23 Shew_2975 pseudouridine synthase (RefSeq) 0.17 Shew_3568 cation diffusion facilitator family transporter (RefSeq) low > 60
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS11350 pseudouridine synthase 0.18 A4249_RS11365 cation diffusion facilitator family transporter low > 48
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.18 Pf1N1B4_2726 Cobalt-zinc-cadmium resistance protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.17 AO353_06310 ferrous iron transporter low > 101
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.17 AO356_15475 ferrous iron transporter low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.17 Psyr_4333 Cation efflux protein low > 86
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.17 Psyr_4333 Cation efflux protein low > 86
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.17 Psest_0573 cation diffusion facilitator family transporter low > 67
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.17 PFR28_03835 Ferrous-iron efflux pump FieF low > 88
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.17 Pf6N2E2_5036 Cobalt-zinc-cadmium resistance protein low > 103
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.17 PP_4774 divalent cation efflux transporter 0.14 60
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.16 OH686_08810 Ferrous-iron efflux pump FieF low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.17 PfGW456L13_1393 Cobalt-zinc-cadmium resistance protein low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.18 PS417_24560 ferrous iron transporter low > 88
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.18 PFLU_RS26490 cation diffusion facilitator family transporter low > 109

Not shown: 19 genomes with orthologs for HSERO_RS08590 only; 22 genomes with orthologs for HSERO_RS02620 only