| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dickeya dianthicola 67-19 | 1.0 | HGI48_RS20730 | | high-affinity branched-chain amino acid ABC transporter substrate-binding protein | 1.0 | HGI48_RS19440 | | transcriptional regulator | 0.79 | 12 |
| Dickeya dianthicola ME23 | 0.99 | DZA65_RS21740 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | DZA65_RS20560 | | transcriptional regulator | low | > 75 |
| Dickeya dadantii 3937 | 0.99 | DDA3937_RS00660 | | branched-chain amino acid ABC transporter substrate-binding protein | 1.00 | DDA3937_RS19340 | | transcriptional regulator | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.90 | HER17_RS00495 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.92 | HER17_RS02010 | | transcriptional regulator | low | > 75 |
| Serratia liquefaciens MT49 | 0.88 | IAI46_00960 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.90 | IAI46_23490 | | transcriptional regulator | low | > 86 |
| Rahnella sp. WP5 | 0.87 | EX31_RS14805 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.92 | EX31_RS04470 | | transcriptional regulator | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.85 | LU632_RS19255 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.86 | LU632_RS22710 | | transcriptional regulator | low | > 74 |
| Escherichia coli ECOR38 | 0.79 | HEPCGN_15550 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | HEPCGN_16130 | yheO | Uncharacterized protein YheO | low | > 87 |
| Escherichia coli ECRC99 | 0.79 | KEDOAH_11420 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | KEDOAH_10840 | yheO | Uncharacterized protein YheO | — | — |
| Escherichia coli ECRC101 | 0.79 | MCAODC_07250 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | MCAODC_07830 | yheO | Uncharacterized protein YheO | low | > 87 |
| Escherichia coli ECOR27 | 0.79 | NOLOHH_08525 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | NOLOHH_09100 | yheO | Uncharacterized protein YheO | low | > 75 |
| Escherichia coli ECRC100 | 0.79 | OKFHMN_16720 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | OKFHMN_17300 | yheO | Uncharacterized protein YheO | low | > 80 |
| Escherichia coli ECRC102 | 0.79 | NIAGMN_14490 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | NIAGMN_15070 | yheO | Uncharacterized protein YheO | — | — |
| Escherichia coli Nissle 1917 | 0.79 | ECOLIN_RS19790 | | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | ECOLIN_RS19165 | | transcriptional regulator | low | > 55 |
| Escherichia coli ECRC62 | 0.79 | BNILDI_02990 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | BNILDI_02420 | yheO | Uncharacterized protein YheO | low | > 75 |
| Escherichia coli ECRC98 | 0.79 | JDDGAC_20350 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | 0.89 | JDDGAC_20930 | yheO | Uncharacterized protein YheO | low | > 86 |
| Escherichia coli BW25113 | 0.79 | b3460 | livJ | leucine/isoleucine/valine transporter subunit (NCBI) | 0.89 | b3346 | yheO | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 0.79 | ECD_03309 | | branched-chain amino acid ABC transporter periplasmic binding protein | 0.89 | ECD_03197 | | putative PAS domain-containing DNA-binding transcriptional regulator | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.79 | OHPLBJKB_00243 | | Leu/Ile/Val-binding protein | 0.89 | OHPLBJKB_00357 | | Transcriptional regulator DauR | low | > 73 |
| Escherichia fergusonii Becca | 0.79 | EFB2_00362 | | Leu/Ile/Val-binding protein | 0.89 | EFB2_00477 | | Transcriptional regulator DauR | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.79 | GFF545 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 0.89 | GFF3726 | | YheO-like PAS domain | low | > 78 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS26365 | | branched chain amino acid ABC transporter substrate-binding protein | 0.88 | BWI76_RS25905 | | hypothetical protein | low | > 92 |
| Pantoea sp. MT58 | 0.78 | IAI47_01565 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.88 | IAI47_02055 | | transcriptional regulator | low | > 76 |
| Enterobacter asburiae PDN3 | 0.78 | EX28DRAFT_4290 | | ABC-type branched-chain amino acid transport systems, periplasmic component | 0.88 | EX28DRAFT_4184 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Enterobacter sp. TBS_079 | 0.78 | MPMX20_04334 | | Leucine-specific-binding protein | 0.88 | MPMX20_04239 | | Transcriptional regulator DauR | low | > 85 |
| Pseudomonas fluorescens FW300-N1B4 | 0.60 | Pf1N1B4_3218 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 0.15 | Pf1N1B4_923 | | YheO-like PAS domain | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_2921 | | ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) | 0.14 | Pf6N2E2_5396 | | YheO-like PAS domain | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_05320 | | leucine ABC transporter substrate-binding protein | 0.13 | AO356_17355 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. S08-1 | 0.60 | OH686_04605 | | Branched-chain amino acid ABC transporter, substrate-binding protein LivJ | 0.12 | OH686_07030 | | YheO-like PAS domain | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.60 | PfGW456L13_4606 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | 0.15 | PfGW456L13_1693 | | YheO-like PAS domain | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.60 | AO353_17125 | | leucine ABC transporter substrate-binding protein | 0.14 | AO353_04640 | | hypothetical protein | 0.29 | 25 |
| Pseudomonas putida KT2440 | 0.59 | PP_1141 | | branched-chain amino acids ABC transporter - periplasmic leucine binding subunit | 0.14 | PP_2931 | | conserved protein of unknown function | low | > 96 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_06615 | | ABC transporter for branched-chain amino acids, substrate-binding component (from data) | 0.14 | PS417_12915 | | DNA-binding protein | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | PFLU_RS13585 | | DNA-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | PFLU_RS13585 | | DNA-binding protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.59 | PFR28_00540 | | Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein | 0.12 | PFR28_03547 | | Transcriptional regulator DauR | low | > 88 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS14425 | | leucine ABC transporter substrate-binding protein | 0.13 | RR42_RS11120 | | DNA-binding protein | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS08270 | | amino acid ABC transporter substrate-binding protein | 0.12 | HSERO_RS01425 | | DNA-binding protein | low | > 78 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS14690 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | ABIE40_RS21180 | | PAS domain-containing protein | low | > 107 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.29 | DVU0547 | | high-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein (TIGR) | 0.19 | DVU2206 | | conserved hypothetical protein (TIGR) | 0.26 | 50 |
| Variovorax sp. SCN45 | 0.26 | GFF237 | | ABC-type branched-chain amino acid transport systems, periplasmic component | 0.13 | GFF2493 | | YheO-like PAS domain | low | > 127 |
| Burkholderia phytofirmans PsJN | 0.24 | BPHYT_RS26525 | | amino acid ABC transporter substrate-binding protein | 0.11 | BPHYT_RS10285 | | hypothetical protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.24 | H281DRAFT_02161 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | 0.12 | H281DRAFT_05884 | | Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains | 0.53 | 38 |
| Paraburkholderia sabiae LMG 24235 | 0.24 | QEN71_RS31655 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | QEN71_RS18565 | | PAS domain-containing protein | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.24 | ABIE53_000461 | | branched-chain amino acid transport system substrate-binding protein | 0.10 | ABIE53_005529 | | putative transcriptional regulator YheO | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS12690 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | RPSI07_RS06825 | | DNA-binding protein | low | > 81 |
| Ralstonia solanacearum UW163 | 0.23 | UW163_RS08975 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | UW163_RS17980 | | DNA-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.23 | RALBFv3_RS04695 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | RALBFv3_RS16625 | | DNA-binding protein | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS12255 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | RS_RS24435 | | DNA-binding protein | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.23 | ABZR87_RS00315 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.14 | ABZR87_RS17665 | | PAS domain-containing protein | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_4169 | | Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) | 0.13 | Ac3H11_38 | | YheO-like PAS domain | low | > 79 |
| Fusobacterium nucleatum SB010 | 0.17 | HUW76_08115 | | ABC transporter substrate-binding protein | 0.17 | HUW76_09955 | | PAS domain-containing protein | low | > 35 |
Not shown: 16 genomes with orthologs for HGI48_RS20730 only; 3 genomes with orthologs for HGI48_RS19440 only