Conservation of cofitness between HER17_RS12930 and HER17_RS11100 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12930 microcin C ABC transporter permease 1.0 HER17_RS11100 NAD(P)H nitroreductase 0.58 4
Dickeya dianthicola 67-19 0.87 HGI48_RS09220 ABC transporter permease subunit 0.80 HGI48_RS10305 NAD(P)H nitroreductase low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS09180 ABC transporter permease subunit 0.81 DDA3937_RS10295 NAD(P)H nitroreductase low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS09525 ABC transporter permease subunit 0.81 DZA65_RS10780 NAD(P)H nitroreductase low > 75
Serratia liquefaciens MT49 0.79 IAI46_17325 ABC transporter permease subunit 0.76 IAI46_14320 NAD(P)H nitroreductase 0.50 10
Escherichia coli BW25113 0.76 b2179 yejE predicted oligopeptide transporter subunit (NCBI) 0.71 b1765 ydjA predicted oxidoreductase (NCBI) low > 76
Escherichia fergusonii Becca 0.76 EFB2_01677 Inner membrane ABC transporter permease protein YejE 0.70 EFB2_02229 Putative NAD(P)H nitroreductase YdjA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_01530 Inner membrane ABC transporter permease protein YejE 0.71 OHPLBJKB_01967 Putative NAD(P)H nitroreductase YdjA low > 73
Escherichia coli ECOR27 0.76 NOLOHH_14955 yejE Inner membrane ABC transporter permease protein YejE 0.71 NOLOHH_17330 ydjA NAD(P)H nitroreductase low > 75
Escherichia coli BL21 0.76 ECD_02109 microcin C ABC transporter permease 0.71 ECD_01734 putative oxidoreductase — —
Escherichia coli Nissle 1917 0.76 ECOLIN_RS12740 ABC transporter permease 0.70 ECOLIN_RS09845 NAD(P)H nitroreductase — —
Escherichia coli ECRC62 0.76 BNILDI_13875 yejE Inner membrane ABC transporter permease protein YejE 0.71 BNILDI_16115 ydjA NAD(P)H nitroreductase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF3757 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.71 GFF3484 FIG002003: Protein YdjA low > 78
Escherichia coli ECRC102 0.76 NIAGMN_21145 yejE Inner membrane ABC transporter permease protein YejE 0.71 NIAGMN_01245 ydjA NAD(P)H nitroreductase — —
Escherichia coli ECRC99 0.76 KEDOAH_04805 yejE Inner membrane ABC transporter permease protein YejE 0.71 KEDOAH_01290 ydjA NAD(P)H nitroreductase — —
Escherichia coli ECRC100 0.76 OKFHMN_23380 yejE Inner membrane ABC transporter permease protein YejE 0.71 OKFHMN_26820 ydjA NAD(P)H nitroreductase low > 80
Escherichia coli ECOR38 0.76 HEPCGN_22645 yejE Inner membrane ABC transporter permease protein YejE 0.70 HEPCGN_05190 ydjA NAD(P)H nitroreductase low > 87
Escherichia coli ECRC101 0.76 MCAODC_14430 yejE Inner membrane ABC transporter permease protein YejE 0.71 MCAODC_18590 ydjA NAD(P)H nitroreductase low > 87
Escherichia coli ECRC98 0.76 JDDGAC_27340 yejE Inner membrane ABC transporter permease protein YejE 0.71 JDDGAC_01395 ydjA NAD(P)H nitroreductase low > 86
Klebsiella michiganensis M5al 0.75 BWI76_RS19790 putative binding-protein-dependent transporter 0.70 BWI76_RS11590 NAD(P)H nitroreductase — —
Erwinia tracheiphila SCR3 0.75 LU632_RS17575 microcin C ABC transporter permease 0.72 LU632_RS12965 NAD(P)H nitroreductase low > 74
Enterobacter sp. TBS_079 0.74 MPMX20_03145 Inner membrane ABC transporter permease protein YejE 0.65 MPMX20_01851 Putative NAD(P)H nitroreductase YdjA low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0382 ABC-type uncharacterized transport system, permease component 0.67 EX28DRAFT_1766 Nitroreductase low > 76
Rahnella sp. WP5 0.73 EX31_RS19140 ABC transporter permease subunit 0.71 EX31_RS06310 NAD(P)H nitroreductase low > 89
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_17175 ABC transporter permease 0.55 CSW01_05335 NAD(P)H nitroreductase low > 62
Pantoea sp. MT58 0.69 IAI47_06605 ABC transporter permease subunit 0.74 IAI47_08975 NAD(P)H nitroreductase low > 76
Marinobacter adhaerens HP15 0.67 HP15_1809 peptide ABC transporter, permease protein 0.32 HP15_1466 nitroreductase family protein low > 73
Pseudomonas sp. S08-1 0.65 OH686_03610 ABC transporter, permease protein 2 0.38 OH686_20760 Putative NAD(P)H nitroreductase YdjA low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_2065 ABC-type uncharacterized transport system, permease component 0.41 Psest_1881 Nitroreductase — —
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1756 Binding-protein-dependent transport systems inner membrane component 0.37 Psyr_3592 Nitroreductase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1756 Binding-protein-dependent transport systems inner membrane component 0.37 Psyr_3592 Nitroreductase low > 86
Pseudomonas sp. RS175 0.63 PFR28_01547 Inner membrane ABC transporter permease protein YejE 0.38 PFR28_00799 Putative NAD(P)H nitroreductase YdjA low > 88
Pseudomonas fluorescens SBW25 0.63 PFLU_RS12885 ABC transporter permease 0.39 PFLU_RS24370 NAD(P)H nitroreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS12885 ABC transporter permease 0.39 PFLU_RS24370 NAD(P)H nitroreductase low > 109
Pseudomonas putida KT2440 0.62 PP_4149 putative inner membrane ABC transporter permease protein 0.39 PP_4506 Nitroreductase family protein low > 96
Rhizobium sp. OAE497 0.62 ABIE40_RS00625 ABC transporter permease 0.20 ABIE40_RS09685 nitroreductase low > 107
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_3345 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.39 PfGW456L13_4412 Nitroreductase family protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_582 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.38 Pf6N2E2_2633 Nitroreductase family protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_23465 ABC transporter permease 0.34 AO353_18485 nitroreductase low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_24455 ABC transporter permease 0.38 AO356_03990 nitroreductase low > 104
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_4591 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.40 Pf1N1B4_3544 Nitroreductase family protein — —
Bosea sp. OAE506 0.61 ABIE41_RS23970 ABC transporter permease 0.26 ABIE41_RS14115 nitroreductase — —
Pseudomonas simiae WCS417 0.61 PS417_12195 ABC transporter permease 0.39 PS417_22730 nitroreductase — —
Rhodopseudomonas palustris CGA009 0.60 TX73_019115 ABC transporter permease 0.39 TX73_007145 NAD(P)H nitroreductase low > 86
Acinetobacter radioresistens SK82 0.58 MPMX26_02271 Inner membrane ABC transporter permease protein YejE 0.33 MPMX26_01115 Putative NAD(P)H nitroreductase YdjA low > 36
Agrobacterium fabrum C58 0.58 Atu0189 ABC transporter, membrane spanning protein (peptide) 0.21 Atu1744 nitroreductase family protein low > 89
Sinorhizobium meliloti 1021 0.57 SMc02830 ABC transporter permease 0.16 SMc01012 hypothetical protein — —
Phaeobacter inhibens DSM 17395 0.53 PGA1_c30160 ABC transporter permease protein 0.25 PGA1_c24460 putative nitroreductase low > 62
Variovorax sp. SCN45 0.52 GFF227 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) 0.28 GFF205 Nitroreductase family protein low > 127
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_00562 microcin C transport system permease protein 0.29 H281DRAFT_04933 Nitroreductase low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS07165 peptide ABC transporter permease 0.29 BPHYT_RS35735 nitroreductase low > 109
Paraburkholderia graminis OAS925 0.50 ABIE53_002548 microcin C transport system permease protein 0.28 ABIE53_001681 nitroreductase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF4337 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.23 GFF5834 nitroreductase — —

Not shown: 15 genomes with orthologs for HER17_RS12930 only; 18 genomes with orthologs for HER17_RS11100 only