Conservation of cofitness between HER17_RS20550 and HER17_RS11060 in Pectobacterium carotovorum WPP14

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS20550 fatty acid oxidation complex subunit alpha FadB 1.0 HER17_RS11060 YchJ family protein 0.59 20
Serratia liquefaciens MT49 0.78 IAI46_01130 fatty acid oxidation complex subunit alpha FadB 0.59 IAI46_14260 YchJ family protein low > 86
Escherichia coli ECOR27 0.75 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.49 NOLOHH_20475 ychJ YchJ family protein low > 75
Escherichia coli BW25113 0.75 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 0.49 b1233 ychJ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC101 0.75 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.49 MCAODC_21685 ychJ YchJ family protein low > 87
Escherichia coli ECRC100 0.75 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.49 OKFHMN_28575 ychJ YchJ family protein low > 80
Escherichia coli ECRC99 0.75 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.49 KEDOAH_25570 ychJ YchJ family protein — —
Escherichia coli ECRC102 0.75 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.49 NIAGMN_27660 ychJ YchJ family protein — —
Escherichia coli ECRC98 0.75 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.49 JDDGAC_06000 ychJ YchJ family protein low > 86
Escherichia coli ECOR38 0.75 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.49 HEPCGN_25035 ychJ YchJ family protein low > 87
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.56 EX28DRAFT_0859 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04207 Fatty acid oxidation complex subunit alpha 0.49 OHPLBJKB_02452 hypothetical protein low > 73
Enterobacter sp. TBS_079 0.73 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.54 MPMX20_02595 hypothetical protein low > 85
Escherichia coli ECRC62 0.73 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 0.49 BNILDI_18630 ychJ YchJ family protein low > 75
Klebsiella michiganensis M5al 0.73 BWI76_RS01365 multifunctional fatty acid oxidation complex subunit alpha 0.57 BWI76_RS17285 hypothetical protein low > 92
Escherichia coli BL21 0.73 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.49 ECD_01209 UPF0225 family protein low > 61
Escherichia fergusonii Becca 0.73 EFB2_04771 Fatty acid oxidation complex subunit alpha 0.49 EFB2_02693 hypothetical protein low > 86
Rahnella sp. WP5 0.73 EX31_RS14565 fatty acid oxidation complex subunit alpha FadB 0.56 EX31_RS10110 YchJ family protein low > 89
Dickeya dadantii 3937 0.72 DDA3937_RS20250 fatty acid oxidation complex subunit alpha FadB 0.66 DDA3937_RS10330 YchJ family protein low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS00975 fatty acid oxidation complex subunit alpha FadB 0.68 HGI48_RS10340 YchJ family protein low > 71
Pantoea sp. MT58 0.71 IAI47_18230 fatty acid oxidation complex subunit alpha FadB 0.49 IAI47_09015 YchJ family protein low > 76
Dickeya dianthicola ME23 0.71 DZA65_RS01035 fatty acid oxidation complex subunit alpha FadB 0.68 DZA65_RS10815 YchJ family protein low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13970 fatty acid oxidation complex subunit alpha FadB 0.41 CSW01_09275 hypothetical protein low > 62
Shewanella oneidensis MR-1 0.58 SO0021 fadB fatty oxidation complex, alpha subunit (NCBI ptt file) 0.31 SO2497 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.58 Shewana3_0024 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.29 Shewana3_2159 SecC motif-containing protein (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_0019 fadB multifunctional fatty acid oxidation complex subunit alpha (RefSeq) 0.29 Shew_2056 SecC motif-containing protein (RefSeq) — —
Shewanella amazonensis SB2B 0.57 Sama_0032 fadB Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) (from data) 0.28 Sama_1820 metal-binding protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.55 MIT1002_00575 Fatty acid oxidation complex subunit alpha 0.23 MIT1002_02313 SEC-C motif low > 70
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0356 fatty oxidation complex, alpha subunit FadB 0.33 B158DRAFT_1196 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.35 Psyr_3863 SEC-C motif protein low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.35 Psyr_3863 SEC-C motif protein low > 86
Pseudomonas simiae WCS417 0.53 PS417_07575 multifunctional fatty acid oxidation complex subunit alpha 0.34 PS417_06485 hypothetical protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.34 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.34 PFLU_RS06515 YchJ family protein low > 109
Pseudomonas sp. RS175 0.52 PFR28_01110 Fatty acid oxidation complex subunit alpha 0.36 PFR28_00514 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.36 Pf1N1B4_3187 UPF0225 protein YchJ — —
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.38 Pf6N2E2_2949 UPF0225 protein YchJ — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.37 PfGW456L13_4631 UPF0225 protein YchJ low > 87
Pseudomonas stutzeri RCH2 0.52 Psest_2654 fatty oxidation complex, alpha subunit FadB 0.35 Psest_2861 Uncharacterized protein conserved in bacteria — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00510 multifunctional fatty acid oxidation complex subunit alpha 0.36 AO353_16995 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.37 AO356_05460 hypothetical protein — —
Pseudomonas putida KT2440 0.52 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.37 PP_1119 conserved protein of unknown function low > 96
Pseudomonas sp. S08-1 0.52 OH686_21925 fatty oxidation complex, alpha subunit FadB 0.36 OH686_04855 UPF0225 protein YchJ low > 80
Acinetobacter radioresistens SK82 0.49 MPMX26_00226 Fatty acid oxidation complex subunit alpha 0.30 MPMX26_00137 hypothetical protein low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2109 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.25 GFF1717 UPF0225 protein YchJ low > 90
Rhodopseudomonas palustris CGA009 0.24 TX73_019255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.23 TX73_016105 YchJ family metal-binding protein low > 86
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS12585 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.24 ABZR87_RS06285 YchJ family protein low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.26 RPSI07_RS22830 hypothetical protein low > 81
Ralstonia solanacearum UW163 0.22 UW163_RS14440 3-hydroxyacyl-CoA dehydrogenase 0.21 UW163_RS03095 hypothetical protein — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS01130 3-hydroxyacyl-CoA dehydrogenase 0.21 RALBFv3_RS10485 hypothetical protein low > 76
Ralstonia solanacearum GMI1000 0.22 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase 0.23 RS_RS01325 hypothetical protein low > 80

Not shown: 3 genomes with orthologs for HER17_RS20550 only; 20 genomes with orthologs for HER17_RS11060 only