Conservation of cofitness between HER17_RS21560 and HER17_RS08435 in Pectobacterium carotovorum WPP14

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21560 response regulator 1.0 HER17_RS08435 YccS family putative transporter 0.60 5
Dickeya dianthicola 67-19 0.82 HGI48_RS21345 response regulator 0.74 HGI48_RS15305 TIGR01666 family membrane protein low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS22325 response regulator 0.74 DZA65_RS16130 TIGR01666 family membrane protein low > 75
Pantoea sp. MT58 0.79 IAI47_00340 response regulator 0.63 IAI47_12630 TIGR01666 family membrane protein low > 76
Rahnella sp. WP5 0.76 EX31_RS03275 response regulator 0.68 EX31_RS18025 TIGR01666 family membrane protein low > 89
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3057 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.71 EX28DRAFT_1983 TIGR01666 family membrane protein low > 76
Serratia liquefaciens MT49 0.74 IAI46_21235 response regulator 0.75 IAI46_08890 TIGR01666 family membrane protein low > 86
Klebsiella michiganensis M5al 0.72 BWI76_RS24335 two-component system response regulator QseB 0.69 BWI76_RS09985 membrane protein low > 92
Enterobacter sp. TBS_079 0.72 MPMX20_03863 Transcriptional regulatory protein QseB 0.70 MPMX20_01610 Inner membrane protein YccS low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3138 Two-component system response regulator QseB 0.70 GFF3251 Putative efflux (PET) family inner membrane protein YccS low > 78
Escherichia coli ECRC99 0.71 KEDOAH_09265 Transcriptional regulatory protein QseB 0.70 KEDOAH_22515 yccS Inner membrane protein YccS — —
Escherichia coli ECRC98 0.71 JDDGAC_22515 Transcriptional regulatory protein QseB 0.70 JDDGAC_08830 yccS Inner membrane protein YccS low > 86
Escherichia coli ECRC62 0.71 BNILDI_00855 Transcriptional regulatory protein QseB 0.70 BNILDI_19940 yccS Inner membrane protein YccS low > 75
Escherichia coli ECRC101 0.71 MCAODC_09395 Transcriptional regulatory protein QseB 0.70 MCAODC_24610 yccS Inner membrane protein YccS low > 87
Escherichia coli ECRC100 0.71 OKFHMN_18880 Transcriptional regulatory protein QseB 0.70 OKFHMN_05220 yccS Inner membrane protein YccS low > 80
Escherichia coli ECOR27 0.71 NOLOHH_10660 Transcriptional regulatory protein QseB 0.70 NOLOHH_21775 yccS Inner membrane protein YccS 0.55 30
Escherichia coli ECRC102 0.71 NIAGMN_16645 Transcriptional regulatory protein QseB 0.70 NIAGMN_02940 yccS Inner membrane protein YccS — —
Escherichia coli BW25113 0.71 b3025 qseB DNA-binding response regulator in two-component regulatory system with QseC (NCBI) 0.70 b0960 b0960 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR38 0.70 HEPCGN_17740 Quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.70 HEPCGN_23300 yccS Inner membrane protein YccS low > 87
Escherichia coli BL21 0.70 ECD_02897 quorum sensing DNA-binding response regulator in two-component regulatory system with QseC 0.70 ECD_00964 putative transporter, FUSC superfamily inner membrane protein low > 61
Escherichia fergusonii Becca 0.70 EFB2_00788 Transcriptional regulatory protein QseB 0.70 EFB2_03111 Inner membrane protein YccS low > 86
Escherichia coli Nissle 1917 0.70 ECOLIN_RS17425 quorum sensing response regulator transcription factor QseB 0.70 ECOLIN_RS05045 YccS family putative transporter — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00677 Transcriptional regulatory protein QseB 0.70 OHPLBJKB_02706 Inner membrane protein YccS low > 73
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS21985 transcriptional regulator 0.11 HSERO_RS10560 membrane protein low > 78
Pseudomonas sp. S08-1 0.51 OH686_04665 Two-component system response regulator QseB 0.32 OH686_10645 hypothetical protein low > 80
Variovorax sp. SCN45 0.51 GFF1175 Two-component system response regulator QseB 0.28 GFF2446 FIG00956403: hypothetical protein low > 127
Variovorax sp. OAS795 0.50 ABID97_RS14955 response regulator 0.07 ABID97_RS20740 FUSC family membrane protein low > 91
Pseudomonas sp. RS175 0.50 PFR28_02328 Transcriptional regulatory protein QseB 0.35 PFR28_04174 Inner membrane protein YccS low > 88
Pseudomonas simiae WCS417 0.50 PS417_13595 XRE family transcriptional regulator 0.34 PS417_26380 YccS/YhfK family integral membrane protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS15245 response regulator 0.34 PFLU_RS28030 TIGR01666 family membrane protein low > 109
Pseudomonas fluorescens SBW25 0.49 PFLU_RS15245 response regulator 0.34 PFLU_RS28030 TIGR01666 family membrane protein low > 109
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_3169 Two-component system response regulator QseB 0.33 PfGW456L13_1076 FIG00956403: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_23845 XRE family transcriptional regulator 0.34 AO356_13760 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_1539 Two-component system response regulator QseB 0.34 Pf6N2E2_4671 FIG00956403: hypothetical protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_4454 Two-component system response regulator QseB 0.34 Pf1N1B4_2410 FIG00956403: hypothetical protein — —
Pseudomonas putida KT2440 0.48 PP_2713 DNA-binding response regulator 0.32 PP_4954 conserved membrane protein of unknown function low > 96
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS22890 response regulator transcription factor 0.09 ABZR87_RS02175 FUSC family protein low > 80
Pseudomonas stutzeri RCH2 0.48 Psest_3476 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.35 Psest_0343 hypothetical membrane protein, TIGR01666 low > 67
Ralstonia solanacearum GMI1000 0.48 RS_RS24590 DNA-binding response regulator 0.09 RS_RS14475 FUSC family protein low > 80
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_19370 transcriptional regulator 0.34 AO353_07860 hypothetical protein low > 101
Ralstonia solanacearum PSI07 0.47 RPSI07_RS07290 DNA-binding response regulator 0.09 RPSI07_RS10705 FUSC family protein low > 81
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS16415 DNA-binding response regulator 0.09 RALBFv3_RS06525 FUSC family protein low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS17155 DNA-binding response regulator 0.09 UW163_RS07100 FUSC family protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.33 Psyr_0514 Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK low > 86
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3511 Response regulator receiver:Transcriptional regulatory protein, C-terminal 0.33 Psyr_0514 Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK low > 86
Acinetobacter radioresistens SK82 0.44 MPMX26_03174 Transcriptional regulatory protein QseB 0.51 MPMX26_00618 Inner membrane protein YccS low > 36
Rhodanobacter denitrificans MT42 0.44 LRK55_RS13865 response regulator transcription factor 0.05 LRK55_RS02090 FUSC family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS14145 response regulator transcription factor 0.05 LRK54_RS02335 FUSC family protein low > 59
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS20365 response regulator transcription factor 0.28 ABZR86_RS20530 YccS family putative transporter low > 74
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4942.1 Two-component system regulatory protein 0.30 Xcc-8004.656.1 FIG01209718: hypothetical protein low > 74

Not shown: 14 genomes with orthologs for HER17_RS21560 only; 6 genomes with orthologs for HER17_RS08435 only