| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECOR38 | 1.0 | HEPCGN_17030 | deaD | ATP-dependent RNA helicase DeaD | 1.0 | HEPCGN_16805 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | 0.95 | 3 |
| Escherichia coli BW25113 | 1.00 | b3162 | deaD | inducible ATP-independent RNA helicase (VIMSS) | 1.00 | b3204 | ptsN | sugar-specific enzyme IIA component of PTS (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS18165 | | ATP-dependent RNA helicase DeaD | 0.99 | ECOLIN_RS18435 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_01580 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | BNILDI_01805 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | low | > 75 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00661 | | ATP-dependent RNA helicase DeaD | 0.99 | EFB2_00619 | | Nitrogen regulatory protein | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00538 | | ATP-dependent RNA helicase DeaD | 1.00 | OHPLBJKB_00496 | | Nitrogen regulatory protein | low | > 73 |
| Escherichia coli BL21 | 1.00 | ECD_03029 | | ATP-dependent RNA helicase | 1.00 | ECD_03069 | | sugar-specific enzyme IIA component of PTS | — | — |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_15915 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | NIAGMN_15690 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_09955 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | NOLOHH_09730 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | low | > 75 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_21780 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | JDDGAC_21555 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_18155 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | OKFHMN_17930 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | 0.81 | 3 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_08675 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | MCAODC_08450 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | low | > 87 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_09995 | deaD | ATP-dependent RNA helicase DeaD | 1.00 | KEDOAH_10220 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.89 | GFF1504 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.95 | GFF2948 | | PTS system nitrogen-specific IIA component, PtsN | low | > 78 |
| Klebsiella michiganensis M5al | 0.86 | BWI76_RS25055 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.90 | BWI76_RS25275 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Enterobacter sp. TBS_079 | 0.85 | MPMX20_04066 | | ATP-dependent RNA helicase DeaD | 0.93 | MPMX20_04110 | | Nitrogen regulatory protein | low | > 85 |
| Enterobacter asburiae PDN3 | 0.84 | EX28DRAFT_3211 | | Superfamily II DNA and RNA helicases | 0.93 | EX28DRAFT_3258 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Serratia liquefaciens MT49 | 0.80 | IAI46_01970 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.85 | IAI46_22480 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 86 |
| Rahnella sp. WP5 | 0.80 | EX31_RS08510 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.83 | EX31_RS12390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Dickeya dadantii 3937 | 0.79 | DDA3937_RS03100 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.81 | DDA3937_RS01520 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 74 |
| Dickeya dianthicola ME23 | 0.78 | DZA65_RS03270 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.81 | DZA65_RS01500 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS18175 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.78 | HER17_RS20070 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.78 | LU632_RS21030 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.77 | LU632_RS21290 | ptsN | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pantoea sp. MT58 | 0.78 | IAI47_16990 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.83 | IAI47_17195 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Dickeya dianthicola 67-19 | 0.78 | HGI48_RS03275 | | DEAD/DEAH family ATP-dependent RNA helicase | 0.82 | HGI48_RS01435 | | PTS IIA-like nitrogen regulatory protein PtsN | low | > 71 |
| Shewanella loihica PV-4 | 0.46 | Shew_0531 | | DEAD/DEAH box helicase domain-containing protein (RefSeq) | 0.48 | Shew_3313 | | PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | low | > 60 |
| Dechlorosoma suillum PS | 0.46 | Dsui_1351 | | DNA/RNA helicase, superfamily II | 0.32 | Dsui_0702 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00666 | | Cold-shock DEAD box protein A | 0.37 | MIT1002_00825 | | Nitrogen regulatory protein | 0.73 | 13 |
| Shewanella amazonensis SB2B | 0.45 | Sama_0512 | | ATP-dependent RNA helicase DeaD (RefSeq) | 0.45 | Sama_3090 | | nitrogen regulatory IIA protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_3595 | | DEAD/DEAH box helicase domain-containing protein (RefSeq) | 0.48 | Shewana3_0670 | | PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.42 | SO4034 | deaD | ATP-dependent RNA helicase DeaD (NCBI ptt file) | 0.47 | SO3963 | ptsN | nitrogen regulatory IIA protein (NCBI ptt file) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.37 | CSW01_18185 | | DEAD/DEAH box family ATP-dependent RNA helicase | 0.54 | CSW01_12825 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas sp. S08-1 | 0.37 | OH686_22545 | | DEAD-box ATP-dependent RNA helicase DeaD ( CshA) | 0.35 | OH686_08555 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1804 | | Superfamily II DNA and RNA helicases | 0.35 | Psest_3315 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_1868 | | ATP-dependent DEAD-box RNA helicase DeaD | 0.36 | PP_0950 | | phosphotransferase system enzyme IIA, regulation of potassium transport | — | — |
| Pseudomonas sp. RS175 | 0.36 | PFR28_00980 | | ATP-dependent RNA helicase DeaD | 0.36 | PFR28_00171 | | Nitrogen regulatory protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS08490 | | DEAD/DEAH box helicase | 0.36 | PFLU_RS04390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS08490 | | DEAD/DEAH box helicase | 0.36 | PFLU_RS04390 | | PTS IIA-like nitrogen regulatory protein PtsN | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_03110 | | RNA helicase | 0.35 | AO356_07045 | | PTS fructose transporter subunit IIA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.36 | Pf1N1B4_265 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.36 | Pf1N1B4_1082 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas simiae WCS417 | 0.36 | PS417_08540 | | RNA helicase | 0.35 | PS417_04335 | | PTS fructose transporter subunit IIA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_2450 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.35 | Pf6N2E2_3269 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.36 | AO353_19130 | | RNA helicase | 0.36 | AO353_05190 | | PTS fructose transporter subunit IIA | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_2247 | | DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) | 0.36 | PfGW456L13_5016 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_3619 | | Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal | 0.36 | Psyr_4149 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_3619 | | Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal | 0.36 | Psyr_4149 | | PTS IIA-like nitrogen-regulatory protein PtsN | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_2125 | | DEAD/DEAH box helicase domain protein (RefSeq) | 0.22 | DvMF_0425 | | putative PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU3310 | deaD | ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) | 0.21 | DVU1630 | ptsN | PTS system, IIA component (TIGR) | low | > 55 |
Not shown: 19 genomes with orthologs for HEPCGN_17030 only; 25 genomes with orthologs for HEPCGN_16805 only