Conservation of cofitness between GFF1934 and GFF883 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF883 Predicted transcriptional regulator of the myo-inositol catabolic operon 0.84 7
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.61 MPMX20_03376 HTH-type transcriptional regulator MurR low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.61 EX28DRAFT_0146 transcriptional regulator, RpiR family low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.80 BWI76_RS03080 (Fe-S)-cluster assembly protein low > 92
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.62 HER17_RS14445 MurR/RpiR family transcriptional regulator low > 75
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.83 IAI47_01475 MurR/RpiR family transcriptional regulator low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.79 LU632_RS02360 MurR/RpiR family transcriptional regulator — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.82 IAI46_24010 MurR/RpiR family transcriptional regulator low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.62 DZA65_RS03850 MurR/RpiR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.63 HGI48_RS03725 SIS domain-containing protein low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.63 DDA3937_RS03665 MurR/RpiR family transcriptional regulator low > 74
Pseudomonas fluorescens SBW25 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.32 PFLU_RS12580 MurR/RpiR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.32 PFLU_RS12580 MurR/RpiR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.32 PS417_11845 RpiR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 Pf1N1B4_4273 Predicted transcriptional regulator of the myo-inositol catabolic operon low > 87
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 Pf6N2E2_510 Predicted transcriptional regulator of the myo-inositol catabolic operon low > 103
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_21435 pseudouridine synthase 0.32 AO356_23155 RpiR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.32 PFR28_02426 HTH-type transcriptional regulator MurR low > 88
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.32 Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.32 Psyr_3275 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) low > 86
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_20660 pseudouridine synthase 0.32 AO353_21330 RpiR family transcriptional regulator low > 101
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS16485 tRNA pseudouridine synthase A 0.36 HSERO_RS12105 RpiR family transcriptional regulator 0.37 5
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.35 BPHYT_RS13890 RpiR family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.35 ABIE53_002944 DNA-binding MurR/RpiR family transcriptional regulator low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.35 H281DRAFT_04463 transcriptional regulator, RpiR family low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.34 QEN71_RS05080 MurR/RpiR family transcriptional regulator low > 153
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.32 RALBFv3_RS15395 MurR/RpiR family transcriptional regulator — —
Ralstonia solanacearum UW163 0.43 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.32 UW163_RS12855 MurR/RpiR family transcriptional regulator — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.32 RPSI07_RS17960 MurR/RpiR family transcriptional regulator low > 81
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.31 RS_RS06260 MurR/RpiR family transcriptional regulator — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.18 ABCV34_RS13380 MurR/RpiR family transcriptional regulator low > 48
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.18 ABZR87_RS04920 MurR/RpiR family transcriptional regulator low > 80
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14370 tRNA pseudouridine synthase A 0.19 RR42_RS26840 DNA-binding protein — —
Bosea sp. OAE506 0.34 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.14 ABIE41_RS16720 MurR/RpiR family transcriptional regulator low > 77
Sinorhizobium meliloti 1021 0.30 SMc01099 tRNA pseudouridine synthase A 0.33 SMc01164 hypothetical protein low > 103
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.38 CCNA_01355 transcriptional regulator IolR low > 67
Agrobacterium fabrum C58 0.29 Atu0368 tRNA pseudouridine synthase I 0.30 Atu4514 RpiR family transcriptional regulator low > 89
Caulobacter crescentus NA1000 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.38 CCNA_01355 transcriptional regulator IolR low > 66
Rhizobium sp. OAE497 0.29 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.31 ABIE40_RS05995 MurR/RpiR family transcriptional regulator low > 107

Not shown: 64 genomes with orthologs for GFF1934 only; 0 genomes with orthologs for GFF883 only