| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_0138 | | ABC-type amino acid transport/signal transduction systems, periplasmic component/domain | 1.0 | Psest_0705 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.35 | 18 |
| Pseudomonas sp. S08-1 | 0.80 | OH686_14500 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | 0.78 | OH686_16390 | | Type IV fimbriae expression regulatory protein PilR | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_09900 | | ABC transporter for L-Lysine, periplasmic substrate-binding component (from data) | 0.75 | AO356_15905 | | transcriptional regulator | low | > 104 |
| Pseudomonas sp. RS175 | 0.73 | PFR28_04914 | | ABC transporter arginine-binding protein 1 | 0.75 | PFR28_03751 | | Regulatory protein AtoC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.73 | Pf6N2E2_3856 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.75 | Pf6N2E2_5122 | | Type IV fimbriae expression regulatory protein PilR | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.73 | AO353_11995 | | amino acid ABC transporter | 0.74 | AO353_14200 | | transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.72 | Pf1N1B4_1641 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.75 | Pf1N1B4_2818 | | Type IV fimbriae expression regulatory protein PilR | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.70 | Psyr_4912 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.73 | Psyr_0722 | | Two-component response regulator PilR | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.70 | PfGW456L13_377 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.70 | PfGW456L13_1489 | | Type IV fimbriae expression regulatory protein PilR | low | > 87 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.70 | Psyr_4912 | | amino acid ABC transporter substrate-binding protein, PAAT family | 0.73 | Psyr_0722 | | Two-component response regulator PilR | low | > 86 |
| Pseudomonas simiae WCS417 | 0.68 | PS417_01495 | | amino acid ABC transporter | 0.36 | PS417_05525 | | Fis family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.68 | PFLU_RS01535 | | ABC transporter substrate-binding protein | 0.37 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.68 | PFLU_RS01535 | | ABC transporter substrate-binding protein | 0.37 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF768 | | Arginine ABC transporter, periplasmic arginine-binding protein ArtJ | 0.36 | GFF4188 | | Response regulator of zinc sigma-54-dependent two-component system | low | > 78 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS19240 | | ABC transporter substrate-binding protein | 0.36 | BWI76_RS01605 | | transcriptional regulatory protein ZraR | 0.19 | 80 |
| Rahnella sp. WP5 | 0.35 | EX31_RS18655 | | arginine ABC transporter substrate-binding protein | 0.35 | EX31_RS20615 | | two-component system response regulator GlrR | low | > 89 |
| Escherichia coli ECRC62 | 0.34 | BNILDI_20555 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli Nissle 1917 | 0.34 | ECOLIN_RS04580 | | arginine ABC transporter substrate-binding protein ArtJ | 0.38 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | — | — |
| Escherichia coli BL21 | 0.34 | ECD_00865 | | arginine ABC transporter periplasmic binding protein | 0.38 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | low | > 60 |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_02100 | artJ | ABC transporter substrate-binding protein ArtJ | 0.38 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_02808 | | ABC transporter arginine-binding protein 1 | 0.38 | OHPLBJKB_01490 | | Regulatory protein AtoC | low | > 73 |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_22300 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 57 |
| Escherichia fergusonii Becca | 0.34 | EFB2_03201 | | ABC transporter arginine-binding protein 1 | 0.38 | EFB2_01635 | | Regulatory protein AtoC | low | > 86 |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_09550 | artJ | ABC transporter substrate-binding protein ArtJ | 0.35 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli BW25113 | 0.34 | b0860 | artJ | arginine transporter subunit (NCBI) | 0.38 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.34 | OKFHMN_05915 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_21995 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC101 | 0.34 | MCAODC_25130 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_03960 | artJ | ABC transporter substrate-binding protein ArtJ | 0.36 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_01503 | | ABC transporter arginine-binding protein 1 | 0.34 | MPMX20_03423 | | Transcriptional regulatory protein QseF | low | > 85 |
| Pantoea sp. MT58 | 0.33 | IAI47_13015 | | arginine ABC transporter substrate-binding protein | 0.33 | IAI47_04945 | | two-component system response regulator GlrR | low | > 76 |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS09510 | | arginine ABC transporter substrate-binding protein | 0.34 | DDA3937_RS15640 | | two-component system response regulator GlrR | low | > 74 |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_2091 | | lysine-arginine-ornithine-binding periplasmic protein | 0.34 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4691 | | Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein | 0.42 | GFF595 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.64 | 77 |
| Marinobacter adhaerens HP15 | 0.30 | HP15_3031 | | L-arginine ABC transporter, periplasmic substrate-binding component ArtJ/HisJ/ArtI/AotJ/ArgT (from data) | 0.59 | HP15_523 | | two component, sigma54 specific, transcriptional regulator, Fis family | low | > 73 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS10775 | | cysteine ABC transporter substrate-binding protein | 0.33 | HSERO_RS23170 | | ATPase AAA | low | > 78 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_0860 | | extracellular solute-binding protein family 3 (RefSeq) | 0.39 | DvMF_2109 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 51 |
| Variovorax sp. SCN45 | 0.23 | GFF6211 | | ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) | 0.44 | GFF4432 | | Two-component system response regulator protein | low | > 127 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU0386 | glnH | amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) | 0.35 | DVU3305 | atoC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | low | > 55 |
| Acidovorax sp. GW101-3H11 | 0.21 | Ac3H11_3325 | | Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) | 0.44 | Ac3H11_4019 | | Sigma-54 dependent transcriptional regulator | low | > 79 |
| Ralstonia sp. UNC404CL21Col | 0.20 | ABZR87_RS00675 | | glutamine ABC transporter substrate-binding protein | 0.44 | ABZR87_RS01750 | | sigma-54 dependent transcriptional regulator | low | > 80 |
| Shewanella loihica PV-4 | 0.17 | Shew_3166 | | extracellular solute-binding protein (RefSeq) | 0.33 | Shew_3682 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Variovorax sp. OAS795 | 0.15 | ABID97_RS20045 | | transporter substrate-binding domain-containing protein | 0.43 | ABID97_RS06415 | | sigma-54 dependent transcriptional regulator | — | — |
| Shewanella sp. ANA-3 | 0.15 | Shewana3_0882 | | extracellular solute-binding protein (RefSeq) | 0.33 | Shewana3_4076 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
Not shown: 32 genomes with orthologs for Psest_0138 only; 18 genomes with orthologs for Psest_0705 only