Conservation of cofitness between GFF5323 and GFF5322 in Variovorax sp. SCN45

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5323 Type IV pilus biogenesis protein PilQ 1.0 GFF5322 Type IV pilus biogenesis protein PilP 0.99 7
Variovorax sp. OAS795 0.83 ABID97_RS23265 type IV pilus secretin PilQ 0.87 ABID97_RS23270 pilus assembly protein PilP 0.98 8
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF1333 Type IV pilus biogenesis protein PilQ 0.47 GFF1334 Type IV pilus biogenesis protein PilP 0.83 4
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS02600 temperature dependent type IV pilus secretin PilQ 0.36 ABZR87_RS02605 pilus assembly protein PilP 0.98 4
Ralstonia solanacearum UW163 0.46 UW163_RS06670 type IV pilus secretin PilQ 0.34 UW163_RS06665 pilus assembly protein PilP — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS06945 type IV pilus secretin PilQ 0.34 RALBFv3_RS06950 pilus assembly protein PilP 0.59 12
Ralstonia solanacearum PSI07 0.46 RPSI07_RS10290 type IV pilus secretin PilQ 0.35 RPSI07_RS10285 pilus assembly protein PilP 0.72 12
Ralstonia solanacearum GMI1000 0.46 RS_RS14890 type IV pilus secretin PilQ 0.35 RS_RS14895 pilus assembly protein PilP low > 80
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS19015 secretin 0.30 RR42_RS19020 pilus assembly protein PilP low > 128
Dechlorosoma suillum PS 0.44 Dsui_1191 type IV pilus secretin PilQ/competence protein 0.35 Dsui_1190 Tfp pilus assembly protein PilP 0.69 37
Pseudomonas sp. RS175 0.34 PFR28_05011 Type 3 secretion system secretin 0.22 PFR28_05010 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_12495 fimbrial protein 0.24 AO353_12490 pilus assembly protein PilP low > 101
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1539 Type IV pilus biogenesis protein PilQ 0.23 Pf1N1B4_1540 Type IV pilus biogenesis protein PilP low > 87
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3756 Type IV pilus biogenesis protein PilQ 0.23 Pf6N2E2_3757 Type IV pilus biogenesis protein PilP low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.28 Psyr_0406 Pilus assembly protein, PilQ 0.34 53
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_277 Type IV pilus biogenesis protein PilQ 0.24 PfGW456L13_278 Type IV pilus biogenesis protein PilP low > 87
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.28 Psyr_0406 Pilus assembly protein, PilQ low > 86
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_09395 fimbrial protein 0.23 AO356_09400 pilus assembly protein PilP low > 104
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0762 type IV pilus secretin (or competence protein) PilQ 0.21 B158DRAFT_0761 Tfp pilus assembly protein PilP 0.78 2
Pseudomonas stutzeri RCH2 0.32 Psest_3715 type IV pilus secretin (or competence protein) PilQ 0.26 Psest_3716 Tfp pilus assembly protein PilP 0.92 1
Marinobacter adhaerens HP15 0.32 HP15_478 type 4 fimbrial biogenesis protein PilQ 0.26 HP15_477 type 4 fimbrial biogenesis protein PilP low > 73
Acinetobacter radioresistens SK82 0.30 MPMX26_02812 Type 3 secretion system secretin 0.19 MPMX26_02813 hypothetical protein 0.98 1
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_12040 pilQ type IV pilus secretin PilQ 0.24 OKGIIK_12045 pilP fimbrial protein low > 52
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS11790 type IV pilus secretin PilQ 0.25 ABZR86_RS11795 pilus assembly protein PilP 0.79 13
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS11855 type IV pilus secretin PilQ 0.24 LRK54_RS11850 pilus assembly protein PilP 0.98 1
Rhodanobacter denitrificans MT42 0.29 LRK55_RS11580 type IV pilus secretin PilQ 0.24 LRK55_RS11575 pilus assembly protein PilP 0.88 3
Shewanella amazonensis SB2B 0.29 Sama_3369 type IV pilus biogenesis protein PilQ (RefSeq) 0.24 Sama_3370 type IV pilus biogenesis protein PilP (RefSeq) low > 62
Shewanella oneidensis MR-1 0.29 SO0285 type IV pilus biogenesis protein PilQ (NCBI ptt file) 0.23 SO0284 type IV pilus biogenesis protein PilP (NCBI ptt file) 0.25 35
Shewanella sp. ANA-3 0.28 Shewana3_3895 type IV pilus secretin PilQ (RefSeq) 0.22 Shewana3_3896 methyl-accepting chemotaxis sensory transducer (RefSeq) 0.57 2
Shewanella loihica PV-4 0.28 Shew_0212 type IV pilus secretin PilQ (RefSeq) 0.25 Shew_0211 pilus assembly protein, PilQ (RefSeq) 0.30 53
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_13310 type IV pilus secretin PilQ 0.19 CSW01_13315 fimbrial protein low > 62
Alteromonas macleodii MIT1002 0.24 MIT1002_00449 Type IV pilus biogenesis and competence protein PilQ precursor 0.21 MIT1002_00450 Pilus assembly protein, PilP low > 70

Not shown: 3 genomes with orthologs for GFF5323 only; 2 genomes with orthologs for GFF5322 only