Conservation of cofitness between GFF5323 and GFF5321 in Variovorax sp. SCN45

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5323 Type IV pilus biogenesis protein PilQ 1.0 GFF5321 Type IV pilus biogenesis protein PilO 0.99 9
Variovorax sp. OAS795 0.83 ABID97_RS23265 type IV pilus secretin PilQ 0.81 ABID97_RS23275 type 4a pilus biogenesis protein PilO 0.99 1
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF1333 Type IV pilus biogenesis protein PilQ 0.60 GFF1335 Type IV pilus biogenesis protein PilO 0.95 1
Acidovorax sp. GW101-3H11 0.59 Ac3H11_4703 Type IV pilus biogenesis protein PilQ 0.61 Ac3H11_4702 Type IV pilus biogenesis protein PilO 0.68 2
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS02600 temperature dependent type IV pilus secretin PilQ 0.43 ABZR87_RS02610 type 4a pilus biogenesis protein PilO 0.98 3
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS06945 type IV pilus secretin PilQ 0.42 RALBFv3_RS06955 pilus assembly protein PilO 0.79 8
Ralstonia solanacearum UW163 0.46 UW163_RS06670 type IV pilus secretin PilQ 0.42 UW163_RS06660 pilus assembly protein PilO — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS10290 type IV pilus secretin PilQ 0.43 RPSI07_RS10280 pilus assembly protein PilO 0.88 2
Ralstonia solanacearum GMI1000 0.46 RS_RS14890 type IV pilus secretin PilQ 0.44 RS_RS14900 type IV pilus biogenesis protein PilO low > 80
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS19015 secretin 0.42 RR42_RS19025 pilus assembly protein PilO 0.21 109
Dechlorosoma suillum PS 0.44 Dsui_1191 type IV pilus secretin PilQ/competence protein 0.44 Dsui_1189 Tfp pilus assembly protein PilO 0.71 29
Pseudomonas sp. S08-1 0.35 OH686_10025 Type IV pilus biogenesis protein PilQ 0.26 OH686_10040 Type IV pilus biogenesis protein PilO 0.74 36
Pseudomonas sp. RS175 0.34 PFR28_05011 Type 3 secretion system secretin 0.26 PFR28_05009 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_12495 fimbrial protein 0.25 AO353_12485 pilus assembly protein PilP 0.26 29
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3756 Type IV pilus biogenesis protein PilQ 0.26 Pf6N2E2_3758 Type IV pilus biogenesis protein PilO low > 103
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1539 Type IV pilus biogenesis protein PilQ 0.25 Pf1N1B4_1541 Type IV pilus biogenesis protein PilO low > 87
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.28 Psyr_0405 Pilus assembly protein, PilO low > 86
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_277 Type IV pilus biogenesis protein PilQ 0.25 PfGW456L13_279 Type IV pilus biogenesis protein PilO low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0407 type II and III secretion system protein:NolW-like protein:NolW-like protein 0.28 Psyr_0405 Pilus assembly protein, PilO low > 86
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_09395 fimbrial protein 0.26 AO356_09405 pilus assembly protein PilP low > 104
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_0762 type IV pilus secretin (or competence protein) PilQ 0.20 B158DRAFT_0760 Tfp pilus assembly protein PilO 0.49 16
Pseudomonas stutzeri RCH2 0.32 Psest_3715 type IV pilus secretin (or competence protein) PilQ 0.28 Psest_3717 Tfp pilus assembly protein PilO 0.87 5
Marinobacter adhaerens HP15 0.32 HP15_478 type 4 fimbrial biogenesis protein PilQ 0.27 HP15_476 type 4 fimbrial biogenesis protein PilO — —
Acinetobacter radioresistens SK82 0.30 MPMX26_02812 Type 3 secretion system secretin 0.20 MPMX26_02814 hypothetical protein 0.97 4
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_12040 pilQ type IV pilus secretin PilQ 0.31 OKGIIK_12050 pilO fimbrial protein low > 52
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS11790 type IV pilus secretin PilQ 0.33 ABZR86_RS11800 type 4a pilus biogenesis protein PilO 0.85 9
Rhodanobacter denitrificans MT42 0.29 LRK55_RS11580 type IV pilus secretin PilQ 0.32 LRK55_RS11570 type 4a pilus biogenesis protein PilO 0.93 1
Shewanella amazonensis SB2B 0.29 Sama_3369 type IV pilus biogenesis protein PilQ (RefSeq) 0.28 Sama_3371 type IV pilus biogenesis protein PilO (RefSeq) 0.37 4
Shewanella oneidensis MR-1 0.29 SO0285 type IV pilus biogenesis protein PilQ (NCBI ptt file) 0.23 SO0283 type IV pilus biogenesis protein PilO (NCBI ptt file) 0.30 8
Shewanella sp. ANA-3 0.28 Shewana3_3895 type IV pilus secretin PilQ (RefSeq) 0.22 Shewana3_3897 pilus assembly protein, PilO (RefSeq) low > 73
Shewanella loihica PV-4 0.28 Shew_0212 type IV pilus secretin PilQ (RefSeq) 0.24 Shew_0210 pilus assembly protein, PilO (RefSeq) 0.42 11
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_13310 type IV pilus secretin PilQ 0.17 CSW01_13320 fimbrial protein low > 62

Not shown: 3 genomes with orthologs for GFF5323 only; 2 genomes with orthologs for GFF5321 only