Conservation of cofitness between PS417_10940 and PS417_27225 in Pseudomonas simiae WCS417

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_10940 sugar ABC transporter substrate-binding protein 1.0 PS417_27225 protease 0.17 14
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 1.00 PFLU_RS28885 SPFH/Band 7/PHB domain protein low > 109
Pseudomonas fluorescens SBW25 0.95 PFLU_RS11300 D-xylose ABC transporter substrate-binding protein 1.00 PFLU_RS28885 SPFH/Band 7/PHB domain protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_28505 sugar ABC transporter substrate-binding protein 0.97 AO356_13055 protease low > 104
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_1455 Xylose ABC transporter, periplasmic xylose-binding protein XylF 0.97 Pf6N2E2_4490 Putative stomatin/prohibitin-family membrane protease subunit YbbK low > 103
Herbaspirillum seropedicae SmR1 0.81 HSERO_RS22460 xylose ABC transporter substrate-binding protein 0.35 HSERO_RS10975 stomatin 2 low > 78
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS18220 D-xylose ABC transporter substrate-binding protein 0.35 ABZR87_RS11935 SPFH domain-containing protein low > 80
Burkholderia phytofirmans PsJN 0.78 BPHYT_RS32820 xylose ABC transporter substrate-binding protein 0.34 BPHYT_RS12045 stomatin 2 low > 109
Paraburkholderia graminis OAS925 0.78 ABIE53_004930 D-xylose transport system substrate-binding protein 0.34 ABIE53_002483 regulator of protease activity HflC (stomatin/prohibitin superfamily) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_03877 xylose-binding protein 0.34 H281DRAFT_00629 SPFH domain, Band 7 family protein low > 103
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS25870 D-xylose ABC transporter substrate-binding protein 0.34 QEN71_RS06515 stomatin-like protein low > 153
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS14420 D-xylose ABC transporter substrate-binding protein 0.60 ABZR86_RS10545 SPFH domain-containing protein low > 74
Ralstonia solanacearum GMI1000 0.68 RS_RS24945 D-xylose ABC transporter substrate-binding protein 0.35 RS_RS07140 SPFH/Band 7/PHB domain protein low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS07635 D-xylose ABC transporter substrate-binding protein 0.35 RPSI07_RS17005 SPFH/Band 7/PHB domain protein low > 81
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS23505 D-xylose ABC transporter substrate-binding protein 0.34 RALBFv3_RS00485 SPFH/Band 7/PHB domain protein — —
Ralstonia solanacearum UW163 0.65 UW163_RS16755 D-xylose ABC transporter substrate-binding protein 0.34 UW163_RS13815 SPFH/Band 7/PHB domain protein — —
Serratia liquefaciens MT49 0.63 IAI46_00285 D-xylose ABC transporter substrate-binding protein 0.66 IAI46_05325 SPFH/Band 7/PHB domain protein low > 86
Dickeya dianthicola ME23 0.61 DZA65_RS00315 D-xylose ABC transporter substrate-binding protein 0.65 DZA65_RS06240 SPFH/Band 7/PHB domain protein low > 75
Dickeya dianthicola 67-19 0.61 HGI48_RS00315 D-xylose ABC transporter substrate-binding protein 0.65 HGI48_RS05905 SPFH/Band 7/PHB domain protein low > 71
Dickeya dadantii 3937 0.61 DDA3937_RS20930 D-xylose ABC transporter substrate-binding protein 0.64 DDA3937_RS05860 SPFH/Band 7/PHB domain protein low > 74
Klebsiella michiganensis M5al 0.61 BWI76_RS27030 D-xylose transporter subunit XylF 0.69 BWI76_RS06920 paraslipin low > 92
Pantoea sp. MT58 0.60 IAI47_00190 D-xylose ABC transporter substrate-binding protein 0.68 IAI47_14385 SPFH/Band 7/PHB domain protein low > 76
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3831 D-xylose ABC transporter, substrate-binding protein 0.71 EX28DRAFT_2471 Membrane protease subunits, stomatin/prohibitin homologs low > 76
Escherichia coli ECRC99 0.60 KEDOAH_12200 xylF D-xylose ABC transporter substrate-binding protein 0.69 KEDOAH_19970 qmcA Protein QmcA — —
Rahnella sp. WP5 0.60 EX31_RS09760 D-xylose ABC transporter substrate-binding protein 0.65 EX31_RS22590 SPFH/Band 7/PHB domain protein low > 89
Escherichia coli ECRC102 0.60 NIAGMN_13710 xylF D-xylose ABC transporter substrate-binding protein 0.69 NIAGMN_06050 qmcA Protein QmcA — —
Escherichia coli ECRC98 0.60 JDDGAC_19580 xylF D-xylose ABC transporter substrate-binding protein 0.69 JDDGAC_11645 qmcA Protein QmcA low > 86
Escherichia coli ECRC101 0.60 MCAODC_06465 xylF D-xylose ABC transporter substrate-binding protein 0.69 MCAODC_27215 qmcA Protein QmcA low > 87
Escherichia coli ECRC100 0.60 OKFHMN_15950 xylF D-xylose ABC transporter substrate-binding protein 0.69 OKFHMN_08000 qmcA Protein QmcA low > 80
Enterobacter sp. TBS_079 0.60 MPMX20_00164 D-xylose-binding periplasmic protein 0.70 MPMX20_01087 Protein QmcA low > 85
Escherichia coli BL21 0.59 ECD_03418 D-xylose transporter subunit 0.69 ECD_00440 PHB domain membrane-anchored putative protease low > 61
Escherichia coli Nissle 1917 0.59 ECOLIN_RS20395 D-xylose ABC transporter substrate-binding protein 0.69 ECOLIN_RS02895 SPFH domain-containing protein low > 55
Escherichia coli ECOR27 0.59 NOLOHH_07895 xylF D-xylose ABC transporter substrate-binding protein 0.69 NOLOHH_00990 qmcA Protein QmcA low > 75
Escherichia coli ECOR38 0.59 HEPCGN_14835 xylF D-xylose ABC transporter substrate-binding protein 0.69 HEPCGN_06635 qmcA Protein QmcA low > 87
Escherichia fergusonii Becca 0.59 EFB2_00241 D-xylose-binding periplasmic protein 0.69 EFB2_03566 Protein QmcA low > 86
Escherichia coli BW25113 0.59 b3566 xylF D-xylose transporter subunit (NCBI) 0.69 b0489 ybbK predicted protease, membrane anchored (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_00138 D-xylose-binding periplasmic protein 0.69 OHPLBJKB_03185 Protein QmcA low > 73
Escherichia coli ECRC62 0.59 BNILDI_03650 xylF D-xylose ABC transporter substrate-binding protein 0.69 BNILDI_22410 qmcA Protein QmcA low > 75
Pectobacterium carotovorum WPP14 0.59 HER17_RS21080 D-xylose ABC transporter substrate-binding protein 0.67 HER17_RS15610 SPFH/Band 7/PHB domain protein low > 75
Variovorax sp. SCN45 0.37 GFF5603 D-xylose ABC transporter, substrate-binding protein XylF 0.30 GFF234 Protein QmcA (possibly involved in integral membrane quality control) low > 127
Variovorax sp. OAS795 0.36 ABID97_RS01175 D-xylose ABC transporter substrate-binding protein 0.30 ABID97_RS16545 stomatin-like protein low > 91
Rhizobium sp. OAE497 0.35 ABIE40_RS14020 D-xylose ABC transporter substrate-binding protein 0.65 ABIE40_RS16230 SPFH domain-containing protein low > 107
Phaeobacter inhibens DSM 17395 0.34 PGA1_262p00430 glucose transporter, periplasmic substrate-binding component (from data) 0.28 PGA1_c20580 putative protein QmcA low > 62
Sinorhizobium meliloti 1021 0.33 SM_b20902 sugar uptake ABC transporter substrate-binding protein precursor 0.64 SMc04020 hypothetical protein low > 103
Dinoroseobacter shibae DFL-12 0.31 Dshi_2000 xylitol ABC transporter, periplasmic substrate-binding protein (from data) 0.28 Dshi_0613 band 7 protein (RefSeq) low > 64
Agrobacterium fabrum C58 0.31 Atu3576 xylose ABC transporter substrate-binding protein 0.64 Atu3772 hypothetical protein low > 89
Azospirillum sp. SherDot2 0.30 MPMX19_03028 D-xylose-binding periplasmic protein 0.49 MPMX19_00927 Protein QmcA low > 112
Acidovorax sp. GW101-3H11 0.23 Ac3H11_610 L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) 0.33 Ac3H11_2916 Putative stomatin/prohibitin-family membrane protease subunit YbbK low > 79

Not shown: 4 genomes with orthologs for PS417_10940 only; 30 genomes with orthologs for PS417_27225 only