Conservation of cofitness between GFF2433 and GFF3239 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2433 Iron binding protein IscA for iron-sulfur cluster assembly 1.0 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) 0.59 16
Escherichia coli ECRC99 0.98 KEDOAH_06590 iscA iron-sulfur cluster assembly protein IscA 0.92 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR38 0.98 HEPCGN_20770 iscA iron-sulfur cluster assembly protein IscA 0.92 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 88
Escherichia coli BL21 0.98 ECD_02420 FeS cluster assembly protein 0.92 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent — —
Escherichia fergusonii Becca 0.98 EFB2_01362 Iron-binding protein IscA 0.92 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli ECRC98 0.98 JDDGAC_25305 iscA iron-sulfur cluster assembly protein IscA 0.92 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC102 0.98 NIAGMN_19400 iscA iron-sulfur cluster assembly protein IscA 0.92 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_01181 Iron-binding protein IscA 0.92 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L — —
Escherichia coli ECRC100 0.98 OKFHMN_21630 iscA iron-sulfur cluster assembly protein IscA 0.92 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR27 0.98 NOLOHH_13300 iscA iron-sulfur cluster assembly protein IscA 0.92 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Escherichia coli ECRC101 0.98 MCAODC_12160 iscA iron-sulfur cluster assembly protein IscA 0.92 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli Nissle 1917 0.98 ECOLIN_RS14355 iron-sulfur cluster assembly protein IscA 0.92 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 55
Escherichia coli BW25113 0.98 b2528 iscA iron-sulfur cluster assembly protein (NCBI) 0.92 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli ECRC62 0.98 BNILDI_12100 iscA iron-sulfur cluster assembly protein IscA 0.92 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Klebsiella michiganensis M5al 0.97 BWI76_RS21150 iron-sulfur cluster assembly accessory protein 0.87 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase — —
Klebsiella pneumoniae MKP103 0.97 KDGMDA_28275 iron-sulfur cluster assembly protein IscA 0.87 KDGMDA_18160 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 95
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0112 iron-sulfur cluster assembly protein IscA 0.88 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase — —
Enterobacter sp. TBS_079 0.95 MPMX20_03409 Iron-binding protein IscA 0.88 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Dickeya dianthicola 67-19 0.84 HGI48_RS15635 iron-sulfur cluster assembly protein IscA 0.77 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Dickeya dianthicola ME23 0.84 DZA65_RS16710 iron-sulfur cluster assembly protein IscA 0.77 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS15535 iron-sulfur cluster assembly protein IscA 0.77 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Serratia liquefaciens MT49 0.82 IAI46_19345 iron-sulfur cluster assembly protein IscA 0.78 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS06025 iron-sulfur cluster assembly protein IscA 0.78 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_03895 iron-sulfur cluster assembly protein IscA 0.58 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L — —
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_1461 Iron-binding apoprotein IscA 0.40 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) — —
Pseudomonas stutzeri RCH2 0.74 Psest_1253 iron-sulfur cluster assembly protein IscA 0.43 Psest_1949 Predicted N6-adenine-specific DNA methylase — —
Shewanella loihica PV-4 0.72 Shew_2315 iron-sulfur cluster assembly protein IscA (RefSeq) 0.48 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_863 Iron binding protein IscA for iron-sulfur cluster assembly 0.41 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas sp. SVBP6 0.72 COO64_RS03905 iscA iron-sulfur cluster assembly protein IscA 0.42 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas sp. BP01 0.72 JOY50_RS22810 iscA iron-sulfur cluster assembly protein IscA 0.43 JOY50_RS22095 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas simiae WCS417 0.72 PS417_23190 iron-sulfur cluster assembly protein 0.41 PS417_20930 50S rRNA methyltransferase — —
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_04790 Iron-binding protein IscA 0.42 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L — —
Pseudomonas sp. DMC3 0.72 GFF4348 Iron-binding protein IscA 0.41 GFF5254 Ribosomal RNA large subunit methyltransferase K/L — —
Pseudomonas segetis P6 0.72 MPMX49_01509 Iron-binding protein IscA 0.42 MPMX49_03025 Ribosomal RNA large subunit methyltransferase K/L — —
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_4871 Iron binding protein IscA for iron-sulfur cluster assembly 0.41 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas aeruginosa PA14 0.72 IKLFDK_19630 iron-sulfur cluster assembly protein IscA 0.44 IKLFDK_15510 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas putida KT2440 0.72 PP_0844 iron-sulfur cluster assembly protein, copper(I) binding 0.43 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase — —
Pseudomonas sp. S08-1 0.71 OH686_17485 iron-sulfur cluster assembly protein IscA 0.43 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_1239 HesB/YadR/YfhF:Iron-sulfur cluster assembly protein IscA 0.41 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_1239 HesB/YadR/YfhF:Iron-sulfur cluster assembly protein IscA 0.41 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase — —
Pseudomonas sp. RS175 0.71 PFR28_00288 Iron-binding protein IscA 0.41 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS24845 iron-sulfur cluster assembly protein IscA 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3187 Iron binding protein IscA for iron-sulfur cluster assembly 0.40 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25 0.71 PFLU_RS24845 iron-sulfur cluster assembly protein IscA 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_06635 iron-sulfur cluster assembly protein 0.40 AO356_02605 50S rRNA methyltransferase — —
Shewanella sp. ANA-3 0.70 Shewana3_2278 iron-sulfur cluster assembly protein IscA (RefSeq) 0.47 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.70 SO2266 HesB/YadR/YfhF family protein (NCBI ptt file) 0.48 SO1851 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.69 Sama_1295 HesB/YadR/YfhF family protein (RefSeq) 0.50 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_15845 iron-sulfur cluster assembly protein 0.41 AO353_00775 50S rRNA methyltransferase — —
Acinetobacter baumannii LAC-4 0.65 RR41_RS12335 iron-sulfur cluster assembly protein IscA 0.38 RR41_RS10075 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Acinetobacter radioresistens SK82 0.65 MPMX26_01325 Iron-binding protein IscA 0.38 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L — —
Lysobacter sp. OAE881 0.51 ABIE51_RS12625 iron-sulfur cluster assembly accessory protein 0.38 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Rhodanobacter sp000427505 FW510-R12 0.51 LRK53_RS07395 iron-sulfur cluster assembly accessory protein 0.43 LRK53_RS14000 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02550 iron-sulfur cluster assembly accessory protein 0.42 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS02305 iron-sulfur cluster assembly accessory protein 0.42 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09605 iscA iron-sulfur cluster assembly accessory protein 0.41 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Alteromonas macleodii MIT1002 0.42 MIT1002_02796 Iron-sulfur cluster assembly protein 0.45 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L 0.47 70

Not shown: 35 genomes with orthologs for GFF2433 only; 9 genomes with orthologs for GFF3239 only