Conservation of cofitness between PS417_21480 and PS417_16555 in Pseudomonas simiae WCS417

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21480 23S rRNA pseudouridylate synthase 1.0 PS417_16555 cupin 0.37 8
Pseudomonas fluorescens SBW25 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.98 PFLU_RS18595 cupin domain-containing protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.98 PFLU_RS18595 cupin domain-containing protein 0.29 27
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_01405 23S rRNA pseudouridylate synthase 0.91 AO353_27720 cupin 0.76 1
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 Pf1N1B4_4045 FIG002776: hypothetical protein — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.90 Pf6N2E2_283 FIG002776: hypothetical protein — —
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_20125 23S rRNA pseudouridylate synthase 0.89 AO356_22095 cupin 0.55 3
Pseudomonas sp. RS175 0.92 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.91 PFR28_02622 50S ribosomal protein L16 3-hydroxylase — —
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.89 PfGW456L13_2636 FIG002776: hypothetical protein 0.43 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.88 Psyr_3193 Transcription factor jumonji, jmjC low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.88 Psyr_3193 Transcription factor jumonji, jmjC low > 86
Pseudomonas putida KT2440 0.86 PP_1906 ribosomal large subunit pseudouridine synthase C 0.84 PP_4017 conserved protein of unknown function — —
Pseudomonas stutzeri RCH2 0.82 Psest_1680 pseudouridine synthase, RluA family 0.82 Psest_2018 Uncharacterized conserved protein — —
Pseudomonas sp. S08-1 0.81 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.84 OH686_00190 hypothetical protein — —
Erwinia tracheiphila SCR3 0.54 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.29 LU632_RS14600 cupin domain-containing protein 0.60 70
Escherichia coli Nissle 1917 0.54 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 ECOLIN_RS06500 [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECOR38 0.54 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 HEPCGN_24085 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 85
Escherichia coli ECRC62 0.54 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 BNILDI_19090 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia fergusonii Becca 0.54 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.31 EFB2_02847 50S ribosomal protein L16 3-hydroxylase low > 86
Escherichia coli ECOR27 0.54 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 NOLOHH_20925 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase low > 57
Escherichia coli BW25113 0.54 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.31 b1128 ycfD orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.54 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.31 ECD_01126 50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.31 OHPLBJKB_02540 50S ribosomal protein L16 3-hydroxylase low > 73
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.30 EX28DRAFT_1802 Uncharacterized conserved protein low > 76
Escherichia coli ECRC102 0.54 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 NIAGMN_24760 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.30 GFF3413 FIG002776: hypothetical protein low > 78
Escherichia coli ECRC98 0.54 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 JDDGAC_06730 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECRC101 0.54 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 MCAODC_22450 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECRC101 0.54 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 OKFHMN_00635 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Escherichia coli ECRC99 0.54 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.31 KEDOAH_24720 roxA [50S ribosomal protein L16]-arginine 3-hydroxylase — —
Enterobacter sp. TBS_079 0.54 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.30 MPMX20_01809 50S ribosomal protein L16 3-hydroxylase low > 85
Alteromonas macleodii MIT1002 0.54 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.26 MIT1002_01824 50S ribosomal protein L16 arginine hydroxylase low > 70
Klebsiella michiganensis M5al 0.54 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.30 BWI76_RS11270 50S ribosomal protein L16 arginine hydroxylase — —
Shewanella amazonensis SB2B 0.53 Sama_1988 pseudouridylate synthase (RefSeq) 0.27 Sama_2065 cupin 4 (RefSeq) low > 62
Dickeya dadantii 3937 0.53 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.30 DDA3937_RS11510 cupin domain-containing protein low > 74
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.29 DZA65_RS15735 cupin domain-containing protein low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.30 HGI48_RS14985 cupin domain-containing protein low > 71
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.28 B158DRAFT_2496 Uncharacterized conserved protein low > 40
Shewanella loihica PV-4 0.52 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.29 Shew_1557 cupin 4 family protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.52 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.29 Shewana3_1744 cupin 4 family protein (RefSeq) low > 73
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.47 HP15_2089 cupin 4 family protein — —
Lysobacter sp. OAE881 0.43 ABIE51_RS11800 RluA family pseudouridine synthase 0.41 ABIE51_RS09000 cupin domain-containing protein low > 62
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS14155 pseudouridine synthase 0.31 RR42_RS06270 cupin low > 128
Rhodanobacter denitrificans MT42 0.42 LRK55_RS17750 RluA family pseudouridine synthase 0.36 LRK55_RS00715 cupin domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS17895 RluA family pseudouridine synthase 0.36 LRK54_RS00940 cupin domain-containing protein low > 59
Acinetobacter radioresistens SK82 0.41 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.34 MPMX26_01736 putative ribosomal oxygenase low > 36
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.36 OKGIIK_05950 roxA transcription factor low > 52
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.32 Ac3H11_282 FIG074102: hypothetical protein low > 79
Variovorax sp. OAS795 0.40 ABID97_RS08250 RluA family pseudouridine synthase 0.30 ABID97_RS20150 cupin domain-containing protein low > 91
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS02725 RluA family pseudouridine synthase 0.40 ABZR86_RS05910 cupin domain-containing protein low > 74

Not shown: 35 genomes with orthologs for PS417_21480 only; 2 genomes with orthologs for PS417_16555 only