Conservation of cofitness between HP15_3376 and HP15_3087 in Marinobacter adhaerens HP15

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_3376 RNA polymerase-associated protein RapA 1.0 HP15_3087 protein belonging to uncharacterized protein family UPF0125 0.71 14
Pseudomonas sp. S08-1 0.43 OH686_19955 RNA polymerase associated protein RapA 0.38 OH686_17035 UPF0125 protein RatB low > 80
Pseudomonas stutzeri RCH2 0.43 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family 0.43 Psest_0959 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.42 PfGW456L13_5109 UPF0125 protein yfjF low > 87
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.41 Psyr_4200 Protein of unknown function UPF0125 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit 0.41 Psyr_4200 Protein of unknown function UPF0125 low > 86
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_17155 RNA polymerase-associated protein RapA 0.42 AO353_05675 protein RnfH low > 101
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_04975 RNA polymerase-associated protein RapA 0.42 AO356_07525 protein RnfH — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.37 Pf6N2E2_3374 UPF0125 protein yfjF — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.46 Pf1N1B4_1181 UPF0125 protein yfjF low > 87
Pseudomonas sp. RS175 0.42 PFR28_00612 RNA polymerase-associated protein RapA 0.37 PFR28_00068 hypothetical protein low > 88
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_12705 RNA polymerase-associated protein RapA 0.36 CSW01_04385 RnfH family protein — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS06675 RNA polymerase-associated protein RapA 0.41 PFLU_RS25925 RnfH family protein low > 109
Pectobacterium carotovorum WPP14 0.42 HER17_RS02990 RNA polymerase-associated protein RapA 0.35 HER17_RS17430 RnfH family protein low > 75
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS06675 RNA polymerase-associated protein RapA 0.41 PFLU_RS25925 RnfH family protein 0.29 85
Pseudomonas simiae WCS417 0.41 PS417_06645 RNA polymerase-associated protein RapA 0.41 PS417_24085 protein RnfH low > 88
Erwinia tracheiphila SCR3 0.41 LU632_RS02805 rapA RNA polymerase-associated protein RapA 0.38 LU632_RS17015 RnfH family protein low > 74
Pantoea sp. MT58 0.41 IAI47_16055 RNA polymerase-associated protein RapA 0.31 IAI47_04800 RnfH family protein low > 76
Enterobacter sp. TBS_079 0.41 MPMX20_00753 RNA polymerase-associated protein RapA 0.32 MPMX20_03488 Persistence and stress-resistance antitoxin PasI low > 85
Klebsiella michiganensis M5al 0.41 BWI76_RS04570 RNA polymerase-associated protein RapA 0.31 BWI76_RS21570 RnfH family protein low > 92
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family 0.34 EX28DRAFT_2721 Uncharacterized protein conserved in bacteria low > 76
Serratia liquefaciens MT49 0.41 IAI46_03275 RNA polymerase-associated protein RapA 0.32 IAI46_19645 RnfH family protein low > 86
Shewanella sp. ANA-3 0.40 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) 0.38 Shewana3_2950 hypothetical protein (RefSeq) low > 73
Escherichia fergusonii Becca 0.40 EFB2_03986 RNA polymerase-associated protein RapA 0.33 EFB2_01275 Persistence and stress-resistance antitoxin PasI low > 86
Shewanella amazonensis SB2B 0.40 Sama_3131 ATP-dependent helicase HepA (RefSeq) 0.41 Sama_2386 hypothetical protein (RefSeq) — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS00315 RNA polymerase-associated protein RapA 0.33 ECOLIN_RS14785 RnfH family protein low > 52
Escherichia coli ECRC98 0.40 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.33 JDDGAC_24800 rnfH RnfH family protein — —
Escherichia coli BL21 0.40 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.33 ECD_02506 UPF0125 family protein low > 60
Escherichia coli ECRC62 0.40 BNILDI_08460 rapA RNA polymerase-associated protein RapA 0.33 BNILDI_11610 rnfH RnfH family protein — —
Escherichia coli ECRC99 0.40 KEDOAH_17355 rapA RNA polymerase-associated protein RapA 0.33 KEDOAH_07085 rnfH RnfH family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03599 RNA polymerase-associated protein RapA 0.33 OHPLBJKB_01089 hypothetical protein low > 73
Escherichia coli BW25113 0.40 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.33 b2618 b2618 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC101 0.40 OKFHMN_10800 rapA RNA polymerase-associated protein RapA 0.33 OKFHMN_21135 rnfH RnfH family protein — —
Escherichia coli ECRC101 0.40 MCAODC_01315 rapA RNA polymerase-associated protein RapA 0.33 MCAODC_11660 rnfH RnfH family protein — —
Escherichia coli ECRC102 0.40 NIAGMN_08650 rapA RNA polymerase-associated protein RapA 0.33 NIAGMN_18905 rnfH RnfH family protein — —
Escherichia coli ECOR27 0.40 NOLOHH_03145 rapA RNA polymerase-associated protein RapA 0.33 NOLOHH_12805 rnfH RnfH family protein — —
Escherichia coli ECOR38 0.40 HEPCGN_08790 rapA RNA polymerase-associated protein RapA 0.33 HEPCGN_20255 rnfH RnfH family protein low > 85
Shewanella oneidensis MR-1 0.40 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) 0.37 SO1475 conserved hypothetical protein (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.33 GFF4160 UPF0125 protein yfjF low > 78
Rahnella sp. WP5 0.40 EX31_RS03745 RNA polymerase-associated protein RapA 0.34 EX31_RS21750 RnfH family protein low > 89
Dickeya dadantii 3937 0.40 DDA3937_RS18235 RNA polymerase-associated protein RapA 0.35 DDA3937_RS04315 RnfH family protein low > 74
Dickeya dianthicola 67-19 0.40 HGI48_RS18170 RNA polymerase-associated protein RapA 0.35 HGI48_RS04310 RnfH family protein — —
Dickeya dianthicola ME23 0.40 DZA65_RS19310 RNA polymerase-associated protein RapA 0.35 DZA65_RS04225 RnfH family protein low > 75
Acinetobacter radioresistens SK82 0.37 MPMX26_01027 RNA polymerase-associated protein RapA 0.35 MPMX26_02409 hypothetical protein low > 36
Rhodanobacter denitrificans MT42 0.29 LRK55_RS02635 RNA polymerase-associated protein RapA 0.28 LRK55_RS17790 RnfH family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS02885 RNA polymerase-associated protein RapA 0.28 LRK54_RS17935 RnfH family protein low > 59
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_09865 rapA RNA polymerase-associated protein RapA 0.32 OKGIIK_07365 RnfH family protein low > 52
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS09245 RNA polymerase-associated protein RapA 0.38 ABZR86_RS05690 RnfH family protein low > 74

Not shown: 3 genomes with orthologs for HP15_3376 only; 11 genomes with orthologs for HP15_3087 only