Conservation of cofitness between GFF615 and GFF115 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 1.0 GFF115 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) 0.42 12
Enterobacter asburiae PDN3 0.95 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.94 EX28DRAFT_3715 aconitase (EC 4.2.1.3) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.95 OHPLBJKB_03543 Aconitate hydratase B — —
Escherichia coli BL21 0.94 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.95 ECD_00117 aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase — —
Escherichia coli BW25113 0.94 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.95 b0118 acnB aconitate hydratase (NCBI) low > 76
Escherichia fergusonii Becca 0.94 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.95 EFB2_03927 Aconitate hydratase B low > 86
Escherichia coli Nissle 1917 0.94 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.95 ECOLIN_RS00660 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECOR27 0.94 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 NOLOHH_02825 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC62 0.94 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 BNILDI_08785 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC101 0.94 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 OKFHMN_10480 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC99 0.94 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 KEDOAH_17675 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC98 0.94 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 JDDGAC_14075 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC101 0.94 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 MCAODC_00995 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECRC102 0.94 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 NIAGMN_08330 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Escherichia coli ECOR38 0.94 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.95 HEPCGN_08460 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 85
Enterobacter sp. TBS_079 0.94 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.94 MPMX20_00812 Aconitate hydratase B low > 85
Klebsiella michiganensis M5al 0.94 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.96 BWI76_RS04910 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Dickeya dianthicola 67-19 0.89 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.91 HGI48_RS17825 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Dickeya dadantii 3937 0.88 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.91 DDA3937_RS17885 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Dickeya dianthicola ME23 0.88 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.91 DZA65_RS18970 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pectobacterium carotovorum WPP14 0.88 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.91 HER17_RS03360 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Serratia liquefaciens MT49 0.88 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) 0.92 IAI46_21305 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Rahnella sp. WP5 0.86 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.90 EX31_RS03400 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 89
Erwinia tracheiphila SCR3 0.83 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.91 LU632_RS20210 acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pantoea sp. MT58 0.81 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.93 IAI47_15770 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Vibrio cholerae E7946 ATCC 55056 0.81 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.83 CSW01_03185 aconitate hydratase B — —
Kangiella aquimarina DSM 16071 0.77 B158DRAFT_2395 phosphoenolpyruvate carboxykinase (ATP) 0.77 B158DRAFT_2500 aconitase (EC 4.2.1.3) — —
Agrobacterium fabrum C58 0.43 Atu0035 phosphoenolpyruvate carboxykinase 0.19 Atu4734 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 89
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.18 CA265_RS16400 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase low > 88
Dinoroseobacter shibae DFL-12 0.40 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.18 Dshi_2060 Aconitate hydratase (EC 4.2.1.3) (from data) low > 64
Shewanella amazonensis SB2B 0.38 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.82 Sama_0382 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq) — —
Marinobacter adhaerens HP15 0.38 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.73 HP15_2203 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Shewanella sp. ANA-3 0.37 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.80 Shewana3_0433 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq) — —
Alteromonas macleodii MIT1002 0.37 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.76 MIT1002_00774 Aconitate hydratase 2 low > 70
Shewanella oneidensis MR-1 0.37 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.80 SO0432 acnB aconitate hydratase 2 (NCBI ptt file) — —
Shewanella loihica PV-4 0.37 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.80 Shew_3424 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq) — —
Pseudomonas sp. RS175 0.35 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.80 PFR28_02376 Aconitate hydratase B — —
Pseudomonas simiae WCS417 0.35 PS417_01210 hypothetical protein 0.78 PS417_14990 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.80 Pf1N1B4_4564 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.79 PFLU_RS17020 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pseudomonas fluorescens SBW25 0.35 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.79 PFLU_RS17020 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.80 PfGW456L13_3378 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) — —
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.79 AO353_21605 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.80 Psyr_1726 aconitase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.80 Psyr_1726 aconitase — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.79 AO356_24390 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.80 Pf6N2E2_564 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) — —
Pseudomonas sp. S08-1 0.33 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.80 OH686_03970 aconitate hydratase 2 — —
Pseudomonas stutzeri RCH2 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.80 Psest_2309 aconitate hydratase 2 — —

Not shown: 15 genomes with orthologs for GFF615 only; 20 genomes with orthologs for GFF115 only