Conservation of cofitness between ECD_02634 and ECD_03139 in Escherichia coli BL21

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02634 putative D-glucarate transporter 1.0 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC62 1.00 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 1.00 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00942 putative glucarate transporter 1.00 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli ECOR27 1.00 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 1.00 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia fergusonii Becca 1.00 EFB2_01128 putative glucarate transporter 0.99 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECOR38 1.00 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.99 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli BW25113 1.00 b2789 gudP predicted D-glucarate transporter (NCBI) 1.00 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.99 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 55
Escherichia coli ECRC99 1.00 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.99 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC98 1.00 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.99 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Escherichia coli ECRC101 1.00 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.99 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 87
Escherichia coli ECRC100 1.00 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.99 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Escherichia coli ECRC102 1.00 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.99 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Klebsiella michiganensis M5al 0.98 BWI76_RS22835 MFS transporter 0.90 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF4843 D-glucarate permease 0.90 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_2870 D-galactonate transporter 0.87 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03659 putative glucarate transporter 0.86 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Rahnella sp. WP5 0.87 EX31_RS03160 MFS transporter 0.71 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Erwinia tracheiphila SCR3 0.85 LU632_RS06310 MFS transporter 0.71 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS04075 MFS transporter 0.73 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pantoea sp. MT58 0.83 IAI47_04080 MFS transporter 0.72 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Dickeya dadantii 3937 0.83 DDA3937_RS17055 MFS transporter 0.73 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 2
Dickeya dianthicola 67-19 0.82 HGI48_RS17110 MFS transporter 0.72 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Dickeya dianthicola ME23 0.82 DZA65_RS18185 MFS transporter 0.72 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Pseudomonas putida KT2440 0.69 PP_3600 glucarate transporter 0.41 PP_0066 Ribosomal RNA small subunit methyltransferase B low > 96
Pseudomonas fluorescens SBW25 0.69 PFLU_RS04245 MFS transporter 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS04245 MFS transporter 0.41 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3297 D-galactarate permease 0.41 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Pseudomonas sp. RS175 0.69 PFR28_00144 putative glucarate transporter 0.41 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_05295 glucarate transporter 0.41 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_07175 glucarate transporter 0.41 AO356_11275 16S rRNA methyltransferase low > 104
Pseudomonas simiae WCS417 0.68 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.41 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_5043 D-galactarate permease 0.40 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS20330 MFS transporter 0.32 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1108 D-galactarate permease 0.40 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS15805 glucarate transporter 0.27 HSERO_RS00355 methyltransferase low > 78
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4226 D-galactonate transporter 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4226 D-galactonate transporter 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Ralstonia solanacearum GMI1000 0.67 RS_RS21080 MFS transporter 0.31 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum PSI07 0.67 RPSI07_RS03475 MFS transporter 0.33 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Ralstonia solanacearum UW163 0.66 UW163_RS19435 MFS transporter 0.31 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS19740 MFS transporter 0.31 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.1209.1 D-galactarate permease 0.33 Xcc-8004.4741.1 hypothetical protein 0.33 9
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS29085 glucarate transporter 0.29 RR42_RS20450 16S rRNA methyltransferase low > 128
Azospirillum sp. SherDot2 0.65 MPMX19_02893 putative glucarate transporter 0.23 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B low > 112
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS31870 MFS transporter 0.32 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Paraburkholderia graminis OAS925 0.64 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.31 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24150 glucarate transporter 0.31 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.31 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Serratia liquefaciens MT49 0.35 IAI46_16925 MFS transporter 0.74 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86

Not shown: 1 genomes with orthologs for ECD_02634 only; 36 genomes with orthologs for ECD_03139 only