Conservation of cofitness between ECD_01084 and ECD_02244 in Escherichia coli BL21

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01084 DUF177 family protein 1.0 ECD_02244 putative semialdehyde dehydrogenase 0.78 13
Escherichia fergusonii Becca 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 1.00 EFB2_01539 USG-1 protein low > 86
Escherichia coli ECOR27 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD 1.00 NOLOHH_14300 usg aspartate-semialdehyde dehydrogenase low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD 0.99 ECOLIN_RS13440 aspartate-semialdehyde dehydrogenase low > 55
Escherichia coli ECRC99 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD 1.00 KEDOAH_05530 usg aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD 1.00 NIAGMN_20440 usg aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD 1.00 BNILDI_13220 usg aspartate-semialdehyde dehydrogenase low > 75
Escherichia coli ECOR38 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD 1.00 HEPCGN_21870 usg aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC101 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD 1.00 MCAODC_13705 usg aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli BW25113 1.00 b1088 yceD hypothetical protein (NCBI) 1.00 b2319 usg hypothetical protein (NCBI) low > 76
Escherichia coli ECRC100 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD 1.00 OKFHMN_22665 usg aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECRC98 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 1.00 JDDGAC_26625 usg aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD 1.00 OHPLBJKB_01386 USG-1 protein low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p 0.92 GFF1935 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) 0.70 31
Enterobacter sp. TBS_079 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD 0.90 MPMX20_03254 USG-1 protein low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein 0.88 EX28DRAFT_0285 Aspartate-semialdehyde dehydrogenase low > 76
Klebsiella michiganensis M5al 0.87 BWI76_RS11065 hypothetical protein 0.89 BWI76_RS20385 aspartate-semialdehyde dehydrogenase — —
Rahnella sp. WP5 0.85 EX31_RS24410 23S rRNA accumulation protein YceD 0.71 EX31_RS19605 aspartate-semialdehyde dehydrogenase low > 89
Erwinia tracheiphila SCR3 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD 0.73 LU632_RS07820 aspartate-semialdehyde dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS08625 23S rRNA accumulation protein YceD 0.70 HER17_RS06985 aspartate-semialdehyde dehydrogenase low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.73 DDA3937_RS14470 aspartate-semialdehyde dehydrogenase low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD 0.73 DZA65_RS15375 aspartate-semialdehyde dehydrogenase — —
Dickeya dianthicola 67-19 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD 0.73 HGI48_RS14440 aspartate-semialdehyde dehydrogenase — —
Pantoea sp. MT58 0.79 IAI47_12095 23S rRNA accumulation protein YceD 0.70 IAI47_06240 aspartate-semialdehyde dehydrogenase — —
Serratia liquefaciens MT49 0.73 IAI46_09765 23S rRNA accumulation protein YceD 0.72 IAI46_17845 aspartate-semialdehyde dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_10120 23S rRNA accumulation protein YceD 0.47 CSW01_10520 Aspartate-semialdehyde dehydrogenase 2 — —
Alteromonas macleodii MIT1002 0.46 MIT1002_01728 hypothetical protein 0.42 MIT1002_02531 Aspartate-semialdehyde dehydrogenase 2 — —
Shewanella loihica PV-4 0.44 Shew_1598 hypothetical protein (RefSeq) 0.45 Shew_2308 aspartate-semialdehyde dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.44 SO2781 conserved hypothetical protein (NCBI ptt file) 0.46 SO3070 asd aspartate semialdehyde dehydrogenese (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.44 Sama_1985 hypothetical protein (RefSeq) 0.45 Sama_2152 aspartate-semialdehyde dehydrogenase (RefSeq) — —
Shewanella sp. ANA-3 0.44 Shewana3_2563 hypothetical protein (RefSeq) 0.46 Shewana3_1477 aspartate semialdehyde dehydrogenase (RefSeq) — —
Pseudomonas stutzeri RCH2 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein 0.29 Psest_2587 Aspartate-semialdehyde dehydrogenase — —
Pseudomonas sp. RS175 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD 0.36 PFR28_02819 USG-1 protein — —
Lysobacter sp. OAE881 0.21 ABIE51_RS13965 YceD family protein 0.35 ABIE51_RS08235 aspartate-semialdehyde dehydrogenase — —
Xanthomonas campestris pv. campestris strain 8004 0.20 Xcc-8004.4000.1 COG1399 protein, clustered with ribosomal protein L32p 0.35 Xcc-8004.1957.1 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) — —
Pseudomonas putida KT2440 0.19 PP_1910 conserved protein of unknown function 0.30 PP_1992 aspartate-semialdehyde dehydrogenase — —
Pseudomonas fluorescens SBW25 0.18 PFLU_RS23075 hypothetical protein 0.33 PFLU_RS20555 aspartate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS23075 hypothetical protein 0.33 PFLU_RS20555 aspartate-semialdehyde dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.18 ABZR86_RS06190 YceD family protein 0.38 ABZR86_RS08030 aspartate-semialdehyde dehydrogenase — —
Pseudomonas simiae WCS417 0.17 PS417_21460 metal-binding protein 0.33 PS417_18575 aspartate-semialdehyde dehydrogenase — —
Kangiella aquimarina DSM 16071 0.17 B158DRAFT_1758 Predicted metal-binding, possibly nucleic acid-binding protein 0.38 B158DRAFT_1481 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) — —
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_01385 metal-binding protein 0.34 AO353_20645 aspartate-semialdehyde dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p 0.33 Pf1N1B4_10 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) — —
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p 0.35 PfGW456L13_3943 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) — —
Pseudomonas fluorescens FW300-N2E2 0.16 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p 0.36 Pf6N2E2_68 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) — —
Pseudomonas fluorescens FW300-N2C3 0.16 AO356_20145 metal-binding protein 0.35 AO356_21425 aspartate-semialdehyde dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1643 Protein of unknown function DUF177 0.33 Psyr_1660 Aspartate-semialdehyde dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1643 Protein of unknown function DUF177 0.33 Psyr_1660 Aspartate-semialdehyde dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_05695 Large ribosomal RNA subunit accumulation protein YceD 0.36 OKGIIK_04815 asd aspartate-semialdehyde dehydrogenase — —

Not shown: 3 genomes with orthologs for ECD_01084 only; 34 genomes with orthologs for ECD_02244 only