Conservation of cofitness between ECD_02776 and ECD_01250 in Escherichia coli BL21

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_01250 DNA topoisomerase I, omega subunit 0.67 33
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 1.00 HEPCGN_25595 type I DNA topoisomerase low > 87
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NOLOHH_20270 type I DNA topoisomerase — —
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 MCAODC_15660 type I DNA topoisomerase — —
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b1274 topA DNA topoisomerase I (NCBI) — —
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 1.00 EFB2_02653 DNA topoisomerase 1 low > 86
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 NIAGMN_26775 type I DNA topoisomerase — —
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 JDDGAC_05150 type I DNA topoisomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 1.00 OHPLBJKB_02410 DNA topoisomerase 1 low > 73
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 KEDOAH_26160 type I DNA topoisomerase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 ECOLIN_RS07675 type I DNA topoisomerase — —
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 OKFHMN_02605 type I DNA topoisomerase — —
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.00 BNILDI_18420 type I DNA topoisomerase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.97 GFF2714 DNA topoisomerase I (EC 5.99.1.2) — —
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.94 EX28DRAFT_0945 DNA topoisomerase I, bacterial — —
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.94 MPMX20_02502 DNA topoisomerase 1 — —
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.94 BWI76_RS11925 DNA topoisomerase I — —
Rahnella sp. WP5 0.85 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.86 EX31_RS09895 type I DNA topoisomerase low > 89
Serratia liquefaciens MT49 0.83 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.87 IAI46_13970 type I DNA topoisomerase low > 86
Pantoea sp. MT58 0.82 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.87 IAI47_09235 type I DNA topoisomerase low > 76
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 DDA3937_RS10535 type I DNA topoisomerase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 HGI48_RS10535 type I DNA topoisomerase — —
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 DZA65_RS11015 type I DNA topoisomerase — —
Erwinia tracheiphila SCR3 0.79 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.85 LU632_RS12555 topA type I DNA topoisomerase — —
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.86 HER17_RS10875 type I DNA topoisomerase — —
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.72 Shewana3_1729 DNA topoisomerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.68 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.72 SO2705 topA DNA topoisomerase I (NCBI ptt file) — —
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.72 CSW01_08695 DNA topoisomerase 1 — —
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.72 Sama_1322 DNA topoisomerase I (RefSeq) — —
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.71 Shew_2224 DNA topoisomerase I (RefSeq) — —
Marinobacter adhaerens HP15 0.46 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.66 HP15_1514 DNA topoisomerase I — —
Alteromonas macleodii MIT1002 0.45 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.71 MIT1002_01705 DNA topoisomerase 1 — —
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0180 RNA methyltransferase, RsmE family 0.66 B158DRAFT_2227 DNA topoisomerase I, bacterial low > 40
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.67 AO353_00495 DNA topoisomerase I low > 101
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.68 PFR28_01113 DNA topoisomerase 1 low > 88
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.68 PFLU_RS07665 type I DNA topoisomerase low > 109
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.68 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) — —
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.67 PP_2139 DNA topoisomerase I — —
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.68 AO356_02315 DNA topoisomerase I low > 104
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.68 PfGW456L13_4038 DNA topoisomerase I (EC 5.99.1.2) low > 87
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.68 PS417_07590 DNA topoisomerase I — —
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.68 Pf1N1B4_3906 DNA topoisomerase I (EC 5.99.1.2) — —
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.67 Psyr_3287 DNA topoisomerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.67 Psyr_3287 DNA topoisomerase I — —
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.68 Psest_2651 DNA topoisomerase I, bacterial low > 67
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.67 OH686_21940 DNA topoisomerase I — —
Acinetobacter radioresistens SK82 0.35 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E 0.63 MPMX26_00365 DNA topoisomerase 1 — —
Fusobacterium nucleatum SB010 0.18 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.24 HUW76_06805 type I DNA topoisomerase — —
Rhodopseudomonas palustris CGA009 0.17 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.25 TX73_016155 type I DNA topoisomerase low > 86
Desulfovibrio vulgaris Miyazaki F 0.10 DvMF_0340 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.29 DvMF_2069 DNA topoisomerase I (RefSeq) — —

Not shown: 49 genomes with orthologs for ECD_02776 only; 3 genomes with orthologs for ECD_01250 only