Conservation of cofitness between ECD_01164 and ECD_01084 in Escherichia coli BL21

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_01164 D-amino acid dehydrogenase 1.0 ECD_01084 DUF177 family protein 0.82 6
Escherichia coli ECRC101 1.00 OKFHMN_28290 dadA D-amino acid dehydrogenase 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECOR27 1.00 NOLOHH_20725 dadA D-amino acid dehydrogenase 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC99 1.00 KEDOAH_25305 dadA D-amino acid dehydrogenase 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC62 1.00 BNILDI_18890 dadA D-amino acid dehydrogenase 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS07185 D-amino acid dehydrogenase 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC98 1.00 JDDGAC_06220 dadA D-amino acid dehydrogenase 1.00 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC102 1.00 NIAGMN_27930 dadA D-amino acid dehydrogenase 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC101 1.00 MCAODC_21880 dadA D-amino acid dehydrogenase 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECOR38 1.00 HEPCGN_24750 dadA D-amino acid dehydrogenase 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02500 D-amino acid dehydrogenase 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD low > 73
Escherichia fergusonii Becca 1.00 EFB2_02743 D-amino acid dehydrogenase 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD low > 86
Escherichia coli BW25113 1.00 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) 1.00 b1088 yceD hypothetical protein (NCBI) 0.18 20
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_02699 D-amino acid dehydrogenase 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS17735 D-amino acid dehydrogenase small subunit 0.87 BWI76_RS11065 hypothetical protein — —
Serratia liquefaciens MT49 0.82 IAI46_14460 D-amino acid dehydrogenase 0.73 IAI46_09765 23S rRNA accumulation protein YceD — —
Pantoea sp. MT58 0.80 IAI47_08890 D-amino acid dehydrogenase 0.79 IAI47_12095 23S rRNA accumulation protein YceD — —
Rahnella sp. WP5 0.79 EX31_RS10485 D-amino acid dehydrogenase 0.85 EX31_RS24410 23S rRNA accumulation protein YceD low > 89
Pectobacterium carotovorum WPP14 0.73 HER17_RS11170 D-amino acid dehydrogenase 0.84 HER17_RS08625 23S rRNA accumulation protein YceD low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS13070 D-amino acid dehydrogenase 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD low > 74
Dickeya dianthicola ME23 0.72 DZA65_RS11540 D-amino acid dehydrogenase 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD — —
Dickeya dianthicola 67-19 0.72 HGI48_RS11195 D-amino acid dehydrogenase 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS11170 D-amino acid dehydrogenase 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.44 38
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS08375 D-amino acid dehydrogenase small subunit 0.15 HSERO_RS09580 DNA-binding protein — —
Pseudomonas putida KT2440 0.62 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) 0.19 PP_1910 conserved protein of unknown function — —
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.17 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_09155 amino acid dehydrogenase 0.17 AO353_01385 metal-binding protein — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.18 PFLU_RS23075 hypothetical protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS29380 D-amino acid dehydrogenase 0.18 PFLU_RS23075 hypothetical protein — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.16 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0235 D-amino acid dehydrogenase small subunit 0.16 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas stutzeri RCH2 0.61 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.17 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas simiae WCS417 0.61 PS417_27705 amino acid dehydrogenase 0.17 PS417_21460 metal-binding protein — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.16 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_12620 amino acid dehydrogenase 0.16 AO356_20145 metal-binding protein — —
Pseudomonas sp. RS175 0.60 PFR28_04399 D-amino acid dehydrogenase 1 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD — —
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit 0.15 OKGIIK_05695 Large ribosomal RNA subunit accumulation protein YceD low > 52
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) 0.20 Xcc-8004.4000.1 COG1399 protein, clustered with ribosomal protein L32p low > 74
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_04065 D-amino acid dehydrogenase small subunit 0.50 CSW01_10120 23S rRNA accumulation protein YceD — —
Dechlorosoma suillum PS 0.40 Dsui_0501 glycine/D-amino acid oxidase, deaminating 0.16 Dsui_2443 putative metal-binding protein, possibly nucleic-acid binding protein — —
Marinobacter adhaerens HP15 0.38 HP15_2610 D-amino acid dehydrogenase small subunit 0.25 HP15_2217 protein containing DUF177 — —
Dyella japonica UNC79MFTsu3.2 0.17 ABZR86_RS08930 FAD-dependent oxidoreductase 0.18 ABZR86_RS06190 YceD family protein — —
Shewanella amazonensis SB2B 0.14 Sama_1533 D-amino-acid dehydrogenase (RefSeq) 0.44 Sama_1985 hypothetical protein (RefSeq) — —
Shewanella loihica PV-4 0.11 Shew_2360 D-hydroxyproline dehydrogenase (from data) 0.44 Shew_1598 hypothetical protein (RefSeq) — —

Not shown: 34 genomes with orthologs for ECD_01164 only; 5 genomes with orthologs for ECD_01084 only