Conservation of cofitness between DDA3937_RS15930 and DDA3937_RS15660 in Dickeya dadantii 3937

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS15930 DNA/RNA nuclease SfsA 1.0 DDA3937_RS15660 membrane-bound lytic murein transglycosylase MltF 0.60 16
Dickeya dianthicola 67-19 0.97 HGI48_RS16045 DNA/RNA nuclease SfsA 0.98 HGI48_RS15755 membrane-bound lytic murein transglycosylase MltF low > 71
Dickeya dianthicola ME23 0.97 DZA65_RS17130 DNA/RNA nuclease SfsA 0.97 DZA65_RS16835 membrane-bound lytic murein transglycosylase MltF low > 75
Pectobacterium carotovorum WPP14 0.70 HER17_RS05585 DNA/RNA nuclease SfsA 0.77 HER17_RS05905 membrane-bound lytic murein transglycosylase MltF low > 75
Rahnella sp. WP5 0.68 EX31_RS03245 DNA/RNA nuclease SfsA 0.62 EX31_RS21890 membrane-bound lytic murein transglycosylase MltF low > 89
Serratia liquefaciens MT49 0.68 IAI46_21205 DNA/RNA nuclease SfsA 0.67 IAI46_19480 membrane-bound lytic murein transglycosylase MltF low > 86
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.62 MPMX20_03427 Membrane-bound lytic murein transglycosylase F low > 85
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.62 BNILDI_11940 mltF membrane-bound lytic murein transglycosylase MltF low > 75
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.62 KEDOAH_06755 mltF membrane-bound lytic murein transglycosylase MltF
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.62 NIAGMN_19235 mltF membrane-bound lytic murein transglycosylase MltF
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.62 MCAODC_11995 mltF membrane-bound lytic murein transglycosylase MltF low > 87
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.62 OKFHMN_21465 mltF membrane-bound lytic murein transglycosylase MltF low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.62 OHPLBJKB_01149 Membrane-bound lytic murein transglycosylase F low > 73
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.62 NOLOHH_13140 mltF membrane-bound lytic murein transglycosylase MltF low > 75
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.62 JDDGAC_25130 mltF membrane-bound lytic murein transglycosylase MltF low > 86
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.62 b2558 mltF predicted periplasmic binding protein/transglycosylase (RefSeq) low > 76
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.62 HEPCGN_20610 mltF membrane-bound lytic murein transglycosylase MltF low > 87
Klebsiella michiganensis M5al 0.66 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.61 BWI76_RS21275 lytic transglycosylase F low > 92
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.62 ECOLIN_RS14475 membrane-bound lytic murein transglycosylase MltF
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.60 EX28DRAFT_0090 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein low > 76
Pantoea sp. MT58 0.65 IAI47_15630 DNA/RNA nuclease SfsA 0.65 IAI47_04925 membrane-bound lytic murein transglycosylase MltF low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.62 EFB2_01338 Membrane-bound lytic murein transglycosylase F low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.62 GFF2461 Transglycosylase, Slt family low > 78
Erwinia tracheiphila SCR3 0.64 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.65 LU632_RS17980 mltF membrane-bound lytic murein transglycosylase MltF low > 74
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_03160 DNA/RNA nuclease SfsA 0.46 CSW01_04460 lytic transglycosylase F low > 62
Shewanella loihica PV-4 0.57 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.36 Shew_1300 lytic transglycosylase, catalytic (RefSeq) 0.27 27
Shewanella oneidensis MR-1 0.54 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.37 SO3288 transglycosylase, Slt family (NCBI ptt file) 0.21 44
Shewanella amazonensis SB2B 0.54 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.38 Sama_2351 Slt family transglycosylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.54 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.37 Shewana3_1239 lytic transglycosylase, catalytic (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0055 sugar fermentation stimulation protein 0.37 B158DRAFT_2243 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein low > 40
Marinobacter adhaerens HP15 0.47 HP15_333 sugar fermentation stimulation protein-like protein 0.33 HP15_1238 transglycosylase, Slt family protein low > 73
Pseudomonas putida KT2440 0.45 PP_4691 sugar fermentation stimulation protein A 0.33 PP_1036 membrane-bound lytic murein transglycosylase F low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.33 Psyr_1268 extracellular solute-binding protein, family 3:SLT low > 86
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.33 Psyr_1268 extracellular solute-binding protein, family 3:SLT low > 86
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.35 Pf6N2E2_5430 Transglycosylase, Slt family low > 103
Dechlorosoma suillum PS 0.44 Dsui_0297 sugar fermentation stimulation protein 0.26 Dsui_1697 putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein low > 51
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.35 PFR28_03519 Membrane-bound lytic murein transglycosylase F low > 88
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_16105 XRE family transcriptional regulator 0.35 AO356_17515 murein transglycosylase low > 104
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.34 PFLU_RS24690 membrane-bound lytic murein transglycosylase MltF low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.34 PFLU_RS24690 membrane-bound lytic murein transglycosylase MltF low > 109
Alteromonas macleodii MIT1002 0.43 MIT1002_03689 Sugar fermentation stimulation protein A 0.36 MIT1002_01026 Membrane-bound lytic murein transglycosylase F precursor low > 70
Pseudomonas sp. S08-1 0.42 OH686_17290 sugar fermentation stimulation protein 0.33 OH686_17625 Membrane-bound lytic murein transglycosylase F low > 80
Pseudomonas simiae WCS417 0.42 PS417_23865 XRE family transcriptional regulator 0.34 PS417_23025 murein transglycosylase low > 88
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.35 Pf1N1B4_888 Transglycosylase, Slt family low > 87
Pseudomonas stutzeri RCH2 0.42 Psest_1005 sugar fermentation stimulation protein 0.33 Psest_1217 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein low > 67
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.35 PfGW456L13_4836 Transglycosylase, Slt family low > 87
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_14430 XRE family transcriptional regulator 0.34 AO353_04490 murein transglycosylase low > 101
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU3224 sfsA sugar fermentation stimulation protein (TIGR) 0.13 DVU3205 transglycosylase SLT domain protein (TIGR) low > 55

Not shown: 12 genomes with orthologs for DDA3937_RS15930 only; 8 genomes with orthologs for DDA3937_RS15660 only