Conservation of cofitness between CSW01_01005 and CSW01_14815 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 CSW01_14815 hypothetical protein 0.43 19
Escherichia coli BW25113 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.58 b4546 ypeB hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.58 OHPLBJKB_01313 hypothetical protein low > 73
Dickeya dadantii 3937 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.63 DDA3937_RS17090 DUF3820 family protein low > 74
Escherichia coli ECRC100 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 OKFHMN_22220 ypeB Uncharacterized protein YpeB low > 80
Escherichia fergusonii Becca 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.59 EFB2_01466 hypothetical protein low > 86
Escherichia coli ECRC99 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 KEDOAH_06000 ypeB Uncharacterized protein YpeB — —
Dickeya dianthicola 67-19 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.61 HGI48_RS17140 DUF3820 family protein low > 71
Escherichia coli BL21 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.58 ECD_02310 DUF3820 family protein low > 61
Escherichia coli ECRC98 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 JDDGAC_26170 ypeB Uncharacterized protein YpeB low > 86
Escherichia coli ECRC101 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 MCAODC_12750 ypeB Uncharacterized protein YpeB low > 87
Escherichia coli Nissle 1917 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.57 ECOLIN_RS13850 DUF3820 family protein — —
Escherichia coli ECOR27 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 NOLOHH_13900 ypeB Uncharacterized protein YpeB low > 75
Escherichia coli ECRC62 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 BNILDI_12765 ypeB Uncharacterized protein YpeB low > 75
Escherichia coli ECRC102 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 NIAGMN_19990 ypeB Uncharacterized protein YpeB — —
Rahnella sp. WP5 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.63 EX31_RS20155 DUF3820 family protein low > 89
Enterobacter asburiae PDN3 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.57 EX28DRAFT_0218 Uncharacterized protein conserved in bacteria low > 76
Dickeya dianthicola ME23 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.61 DZA65_RS18225 hypothetical protein low > 75
Escherichia coli ECOR38 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.58 HEPCGN_21400 Putative quorum-sensing-regulated virulence factor low > 87
Enterobacter sp. TBS_079 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.61 MPMX20_03304 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.59 BWI76_RS20620 negative regulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF515 Protein involved in catabolism of external DNA 0.58 GFF2040 FIG074102: hypothetical protein low > 78
Serratia liquefaciens MT49 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.68 IAI46_18425 DUF3820 family protein low > 86
Pectobacterium carotovorum WPP14 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.65 HER17_RS04050 DUF3820 family protein low > 75
Pantoea sp. MT58 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.63 IAI47_05460 DUF3820 family protein low > 76
Shewanella sp. ANA-3 0.49 Shewana3_4038 hypothetical protein (RefSeq) 0.56 Shewana3_1217 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO4659 conserved hypothetical protein (NCBI ptt file) 0.57 SO3326 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_3648 hypothetical protein (RefSeq) 0.55 Shew_1282 hypothetical protein (RefSeq) low > 60
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 ABZR87_RS04155 DUF3820 family protein low > 80
Pseudomonas stutzeri RCH2 0.42 Psest_0408 Protein involved in catabolism of external DNA 0.47 Psest_1458 Uncharacterized protein conserved in bacteria low > 67
Ralstonia solanacearum UW163 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 UW163_RS04725 hypothetical protein — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 RALBFv3_RS08885 hypothetical protein 0.31 56
Paraburkholderia graminis OAS925 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.50 ABIE53_001981 uncharacterized protein (DUF3820 family) low > 113
Ralstonia solanacearum PSI07 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.47 RPSI07_RS08385 hypothetical protein low > 81
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 QEN71_RS22640 DUF3820 family protein low > 153
Ralstonia solanacearum GMI1000 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 RS_RS16700 hypothetical protein low > 80
Pseudomonas sp. S08-1 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.49 OH686_18670 Uncharacterized protein YpeB low > 80
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06880 competence protein ComJ 0.51 BPHYT_RS08730 hypothetical protein low > 109
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS09005 competence protein ComJ 0.47 RR42_RS27745 hypothetical protein low > 128
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 ABZR86_RS01730 DUF3820 family protein low > 74
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.55 LRK55_RS08045 DUF3820 family protein low > 63
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.53 OKGIIK_15025 Cytoplasmic protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.55 LRK54_RS08290 DUF3820 family protein low > 59
Alteromonas macleodii MIT1002 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.57 MIT1002_01393 hypothetical protein low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1683 Protein involved in catabolism of external DNA 0.50 GFF4965 Putative cytoplasmic protein low > 90
Variovorax sp. OAS795 0.32 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 ABID97_RS04120 DUF3820 family protein low > 91
Variovorax sp. SCN45 0.31 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.50 GFF5018 Uncharacterized protein YpeB low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA 0.49 Ac3H11_1029 Putative cytoplasmic protein low > 79

Not shown: 33 genomes with orthologs for CSW01_01005 only; 4 genomes with orthologs for CSW01_14815 only