Conservation of cofitness between CSW01_05795 and CSW01_12905 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05795 cold-shock protein CspD 1.0 CSW01_12905 outer membrane protein assembly factor 0.48 5
Serratia liquefaciens MT49 0.76 IAI46_08505 cold shock-like protein CspD 0.38 IAI46_01770 outer membrane protein assembly factor low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF4903 Cold shock protein CspD 0.37 GFF874 Uncharacterized protein YtfM precursor — —
Klebsiella pneumoniae MKP103 0.75 KDGMDA_17850 cold shock-like protein CspD 0.37 KDGMDA_11250 autotransporter assembly complex protein TamA — —
Escherichia coli ECRC101 0.74 MCAODC_25015 cspD cold shock-like protein CspD 0.36 MCAODC_02515 tamA autotransporter assembly complex protein TamA low > 87
Escherichia fergusonii Becca 0.74 EFB2_03181 Cold shock-like protein CspD 0.36 EFB2_04309 Translocation and assembly module subunit TamA low > 86
Escherichia coli ECOR27 0.74 NOLOHH_22195 cspD cold shock-like protein CspD 0.36 NOLOHH_04260 tamA autotransporter assembly complex protein TamA low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02788 Cold shock-like protein CspD 0.36 OHPLBJKB_03813 Translocation and assembly module subunit TamA — —
Enterobacter sp. TBS_079 0.74 MPMX20_01542 Cold shock-like protein CspD 0.37 MPMX20_00503 Translocation and assembly module subunit TamA low > 85
Klebsiella michiganensis M5al 0.74 BWI76_RS09605 cold-shock protein 0.36 BWI76_RS02775 outer membrane protein assembly factor — —
Escherichia coli ECRC102 0.74 NIAGMN_03840 cspD cold shock-like protein CspD 0.36 NIAGMN_09850 tamA autotransporter assembly complex protein TamA low > 80
Enterobacter asburiae PDN3 0.74 EX28DRAFT_2052 cold shock domain protein CspD 0.37 EX28DRAFT_3406 Outer membrane protein low > 76
Escherichia coli ECRC100 0.74 OKFHMN_05800 cspD cold shock-like protein CspD 0.36 OKFHMN_12000 tamA autotransporter assembly complex protein TamA — —
Escherichia coli BL21 0.74 ECD_00885 inhibitor of DNA replication, cold shock protein-like protein 0.36 ECD_04091 translocation and assembly module for autotransporter export, outer membrane subunit — —
Escherichia coli BW25113 0.74 b0880 cspD cold shock protein homolog (NCBI) 0.36 b4220 ytfM predicted outer membrane protein and surface antigen (NCBI) low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS04685 cold shock-like protein CspD 0.36 ECOLIN_RS24510 autotransporter assembly complex protein TamA — —
Escherichia coli ECRC98 0.74 JDDGAC_09435 cspD cold shock-like protein CspD 0.36 JDDGAC_15640 tamA autotransporter assembly complex protein TamA low > 87
Escherichia coli ECRC99 0.74 KEDOAH_22110 cspD cold shock-like protein CspD 0.36 KEDOAH_16155 tamA autotransporter assembly complex protein TamA — —
Escherichia coli ECRC62 0.74 BNILDI_20450 cspD cold shock-like protein CspD 0.36 BNILDI_07255 tamA autotransporter assembly complex protein TamA low > 75
Escherichia coli ECOR38 0.74 HEPCGN_22885 cspD cold shock-like protein CspD 0.36 HEPCGN_10200 tamA autotransporter assembly complex protein TamA low > 88
Dickeya dianthicola 67-19 0.73 HGI48_RS09565 cold shock-like protein CspD 0.36 HGI48_RS17215 outer membrane protein assembly factor low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS09875 cold shock-like protein CspD 0.36 DZA65_RS18295 outer membrane protein assembly factor low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS09550 cold shock-like protein CspD 0.37 DDA3937_RS17160 outer membrane protein assembly factor low > 74
Rahnella sp. WP5 0.71 EX31_RS18570 cold shock-like protein CspD 0.37 EX31_RS08695 outer membrane protein assembly factor low > 89
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS04375 cold shock-like protein CspD 0.36 PagCFBP13505_RS11310 outer membrane protein assembly factor low > 74
Pectobacterium carotovorum WPP14 0.71 HER17_RS12410 cold shock-like protein CspD 0.38 HER17_RS03980 autotransporter assembly complex protein TamA low > 75
Shewanella loihica PV-4 0.70 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) 0.24 Shew_2172 surface antigen (D15) (RefSeq) — —
Pantoea sp. MT58 0.70 IAI47_12955 cold shock-like protein CspD 0.37 IAI47_02715 outer membrane protein assembly factor low > 76
Shewanella amazonensis SB2B 0.69 Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) 0.25 Sama_1616 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.68 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) 0.26 Shewana3_1894 surface antigen (D15) (RefSeq) low > 73
Shewanella oneidensis MR-1 0.68 SO2628 cspD stress response protein CspD (NCBI ptt file) 0.27 SO2114 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.64 MIT1002_01832 Cold shock-like protein CspD 0.24 MIT1002_04048 Autotransporter assembly factor TamA low > 70
Pseudomonas sp. SVBP6 0.62 COO64_RS24210 cspD cold shock domain-containing protein CspD 0.27 COO64_RS24395 autotransporter assembly complex family protein low > 93
Pseudomonas stutzeri RCH2 0.62 Psest_2025 cold shock domain protein CspD 0.27 Psest_2132 Outer membrane protein low > 67
Pseudomonas aeruginosa PA14 0.62 IKLFDK_13160 cold shock domain-containing protein CspD 0.30 IKLFDK_12500 Translocation and assembly module subunit TamA low > 98
Pseudomonas aeruginosa MRSN321 0.62 DY961_RS04110 cspD;go_process=negative cold shock domain-containing protein CspD 0.30 DY961_RS04915 autotransporter assembly complex family protein low > 100
Pseudomonas aeruginosa PUPa3 0.61 DQ20_RS35135 cspD;go_process=negative cold shock domain-containing protein CspD 0.29 DQ20_RS35815 autotransporter assembly complex family protein low > 101
Pseudomonas sp. DMC3 0.60 GFF1523 Cold shock-like protein CspD 0.27 GFF1483 Translocation and assembly module subunit TamA low > 89
Ralstonia solanacearum PSI07 0.59 RPSI07_RS00010 cold-shock protein 0.11 RPSI07_RS12950 outer membrane protein assembly factor — —
Ralstonia solanacearum GMI1000 0.59 RS_RS17205 cold-shock protein 0.11 RS_RS11970 outer membrane protein assembly factor low > 80
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.3660.1 Cold shock protein CspD 0.20 Xcc-8004.5193.1 Outer membrane protein assembly factor YaeT precursor low > 74
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS23260 cold-shock protein 0.11 RALBFv3_RS04420 outer membrane protein assembly factor — —
Ralstonia solanacearum UW163 0.59 UW163_RS16510 cold-shock protein 0.11 UW163_RS09250 outer membrane protein assembly factor — —
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_04084 cold-shock DNA-binding protein family 0.11 H281DRAFT_00153 autotransporter secretion outer membrane protein TamA — —
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS07020 cold-shock protein 0.12 HSERO_RS07725 membrane protein — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS16740 cold-shock protein 0.18 LRK55_RS12405 autotransporter assembly complex family protein — —
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS17025 cold-shock protein 0.18 LRK54_RS12665 autotransporter assembly complex protein TamA low > 59
Lysobacter sp. OAE881 0.54 ABIE51_RS13800 cold-shock protein 0.16 ABIE51_RS01235 autotransporter assembly complex family protein low > 62

Not shown: 8 genomes with orthologs for CSW01_05795 only; 32 genomes with orthologs for CSW01_12905 only