Conservation of cofitness between CSW01_03750 and CSW01_12705 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03750 U32 family peptidase 1.0 CSW01_12705 RNA polymerase-associated protein RapA 0.59 11
Rahnella sp. WP5 0.77 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ 0.65 EX31_RS03745 RNA polymerase-associated protein RapA low > 89
Serratia liquefaciens MT49 0.76 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ 0.67 IAI46_03275 RNA polymerase-associated protein RapA low > 86
Klebsiella michiganensis M5al 0.76 BWI76_RS19280 U32 family peptidase 0.65 BWI76_RS04570 RNA polymerase-associated protein RapA low > 92
Escherichia coli ECRC62 0.75 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 BNILDI_08460 rapA RNA polymerase-associated protein RapA low > 75
Escherichia coli BL21 0.75 ECD_01986 putative peptidase 0.65 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase low > 61
Escherichia coli ECRC99 0.75 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 KEDOAH_17355 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECOR38 0.75 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.64 HEPCGN_08790 rapA RNA polymerase-associated protein RapA low > 87
Escherichia coli ECOR27 0.75 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 NOLOHH_03145 rapA RNA polymerase-associated protein RapA low > 75
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ 0.65 ECOLIN_RS00315 RNA polymerase-associated protein RapA low > 55
Escherichia coli ECRC102 0.75 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 NIAGMN_08650 rapA RNA polymerase-associated protein RapA — —
Escherichia fergusonii Becca 0.75 EFB2_01770 23S rRNA 5-hydroxycytidine synthase 0.64 EFB2_03986 RNA polymerase-associated protein RapA 0.44 60
Escherichia coli ECRC101 0.75 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 MCAODC_01315 rapA RNA polymerase-associated protein RapA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01623 putative protease YdcP 0.65 OHPLBJKB_03599 RNA polymerase-associated protein RapA low > 73
Escherichia coli ECRC100 0.75 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 OKFHMN_10800 rapA RNA polymerase-associated protein RapA low > 80
Escherichia coli ECRC98 0.75 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.65 JDDGAC_14395 rapA RNA polymerase-associated protein RapA low > 86
Escherichia coli BW25113 0.75 b2081 yegQ predicted peptidase (NCBI) 0.65 b0059 hepA ATP-dependent helicase HepA (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.75 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.64 HER17_RS02990 RNA polymerase-associated protein RapA low > 75
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0478 Collagenase and related proteases 0.65 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase 0.65 MPMX20_00753 RNA polymerase-associated protein RapA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3846 Putative protease 0.65 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 78
Pseudomonas stutzeri RCH2 0.73 Psest_4096 Collagenase and related proteases 0.46 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family low > 67
Shewanella oneidensis MR-1 0.73 SO1252 peptidase, U32 family (NCBI ptt file) 0.61 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.73 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ 0.65 DDA3937_RS18235 RNA polymerase-associated protein RapA low > 74
Pantoea sp. MT58 0.73 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ 0.64 IAI47_16055 RNA polymerase-associated protein RapA low > 76
Shewanella sp. ANA-3 0.72 Shewana3_1068 peptidase U32 (RefSeq) 0.61 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) low > 73
Dickeya dianthicola 67-19 0.71 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ 0.65 HGI48_RS18170 RNA polymerase-associated protein RapA low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ 0.64 DZA65_RS19310 RNA polymerase-associated protein RapA low > 75
Shewanella amazonensis SB2B 0.71 Sama_1004 U32 family peptidase (RefSeq) 0.60 Sama_3131 ATP-dependent helicase HepA (RefSeq) low > 62
Shewanella loihica PV-4 0.71 Shew_2783 peptidase U32 (RefSeq) 0.60 Shew_0457 ATP-dependent helicase HepA (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.70 MIT1002_02342 putative protease YhbU precursor 0.44 MIT1002_00659 RNA polymerase-associated protein RapA low > 70
Erwinia tracheiphila SCR3 0.70 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.62 LU632_RS02805 rapA RNA polymerase-associated protein RapA low > 74
Pseudomonas simiae WCS417 0.69 PS417_10300 protease 0.45 PS417_06645 RNA polymerase-associated protein RapA low > 88
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_3925 Putative protease 0.46 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas fluorescens SBW25 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.50 50
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS10460 tRNA 5-hydroxyuridine modification protein YegQ 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA low > 109
Pseudomonas aeruginosa PA14 0.68 IKLFDK_26220 tRNA 5-hydroxyuridine modification protein YegQ 0.46 IKLFDK_16965 RNA polymerase-associated protein RapA low > 101
Pseudomonas sp. DMC3 0.68 GFF1422 23S rRNA 5-hydroxycytidine synthase 0.46 GFF2193 RNA polymerase-associated protein RapA low > 89
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_19800 protease 0.46 AO353_17155 RNA polymerase-associated protein RapA low > 101
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2485 Putative protease 0.46 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas sp. RS175 0.68 PFR28_02843 hypothetical protein 0.46 PFR28_00612 RNA polymerase-associated protein RapA low > 88
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_45 Putative protease 0.46 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.20 31
Pseudomonas sp. S08-1 0.68 OH686_13055 Uncharacterized protease YegQ 0.47 OH686_19955 RNA polymerase associated protein RapA low > 80
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_21300 protease 0.46 AO356_04975 RNA polymerase-associated protein RapA low > 104
Pseudomonas sp. SVBP6 0.67 COO64_RS24350 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.46 COO64_RS17145 rapA RNA polymerase-associated protein RapA 0.50 19
Pseudomonas putida KT2440 0.65 PP_2206 putative peptidase 0.46 PP_1145 RNA polymerase-associated protein RapA low > 96
Pseudomonas sp. BP01 0.65 JOY50_RS12690 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.46 JOY50_RS24235 rapA RNA polymerase-associated protein RapA low > 84
Acinetobacter radioresistens SK82 0.63 MPMX26_02040 23S rRNA 5-hydroxycytidine synthase 0.37 MPMX26_01027 RNA polymerase-associated protein RapA — —
Marinobacter adhaerens HP15 0.55 HP15_2983 peptidase, U32 family 0.41 HP15_3376 RNA polymerase-associated protein RapA low > 73

Not shown: 7 genomes with orthologs for CSW01_03750 only; 8 genomes with orthologs for CSW01_12705 only