Conservation of cofitness between CSW01_04555 and CSW01_11635 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04555 tRNA pseudouridine(65) synthase TruC 1.0 CSW01_11635 DNA polymerase IV 0.43 8
Pantoea sp. MT58 0.67 IAI47_04065 tRNA pseudouridine(65) synthase TruC 0.54 IAI47_15175 DNA polymerase IV low > 76
Pantoea agglomerans CFBP13505 P0401 0.67 PagCFBP13505_RS16905 tRNA pseudouridine(65) synthase TruC 0.54 PagCFBP13505_RS09990 DNA polymerase IV low > 74
Klebsiella michiganensis M5al 0.66 BWI76_RS22850 tRNA pseudouridine synthase TruC 0.56 BWI76_RS05530 DNA polymerase IV low > 92
Serratia liquefaciens MT49 0.66 IAI46_20290 tRNA pseudouridine(65) synthase TruC 0.54 IAI46_04405 DNA polymerase IV low > 87
Escherichia coli ECRC62 0.65 BNILDI_10595 truC tRNA pseudouridine(65) synthase TruC 0.54 BNILDI_00290 dinB DNA polymerase IV low > 75
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2872 Pseudouridylate synthases, 23S RNA-specific 0.56 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair — —
Escherichia coli ECOR27 0.65 NOLOHH_12090 truC tRNA pseudouridine(65) synthase TruC 0.54 NOLOHH_02095 dinB DNA polymerase IV low > 76
Escherichia coli ECRC99 0.65 KEDOAH_07920 truC tRNA pseudouridine(65) synthase TruC 0.54 KEDOAH_18425 dinB DNA polymerase IV — —
Escherichia coli ECRC102 0.65 NIAGMN_17980 truC tRNA pseudouridine(65) synthase TruC 0.54 NIAGMN_07590 dinB DNA polymerase IV low > 80
Escherichia coli BW25113 0.65 b2791 yqcB tRNA pseudouridine synthase (NCBI) 0.54 b0231 dinB DNA polymerase IV (NCBI) low > 76
Erwinia amylovora T8 0.65 OLJFJH_09220 tRNA pseudouridine(65) synthase TruC 0.55 OLJFJH_18440 DNA polymerase IV low > 58
Escherichia coli ECRC98 0.65 JDDGAC_23875 truC tRNA pseudouridine(65) synthase TruC 0.54 JDDGAC_13355 dinB DNA polymerase IV low > 87
Escherichia coli Nissle 1917 0.65 ECOLIN_RS15550 tRNA pseudouridine(65) synthase TruC 0.54 ECOLIN_RS01780 DNA polymerase IV low > 55
Escherichia coli ECRC101 0.65 MCAODC_10735 truC tRNA pseudouridine(65) synthase TruC 0.54 MCAODC_00250 dinB DNA polymerase IV low > 87
Escherichia coli ECRC100 0.65 OKFHMN_20210 truC tRNA pseudouridine(65) synthase TruC 0.54 OKFHMN_09730 dinB DNA polymerase IV low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00940 tRNA pseudouridine synthase C 0.54 OHPLBJKB_03407 DNA polymerase IV low > 74
Escherichia coli BL21 0.65 ECD_02636 tRNA(Ile1,Asp) pseudouridine(65) synthase 0.54 ECD_00226 DNA polymerase IV low > 61
Klebsiella pneumoniae MKP103 0.65 KDGMDA_03375 tRNA pseudouridine(65) synthase TruC 0.54 KDGMDA_13790 DNA polymerase IV low > 95
Escherichia coli ECOR38 0.65 HEPCGN_19465 truC tRNA pseudouridine(65) synthase TruC 0.54 HEPCGN_07825 dinB DNA polymerase IV low > 88
Escherichia fergusonii Becca 0.65 EFB2_01126 tRNA pseudouridine synthase C 0.54 EFB2_03787 DNA polymerase IV low > 86
Dickeya dianthicola 67-19 0.64 HGI48_RS05085 tRNA pseudouridine(65) synthase TruC 0.52 HGI48_RS16645 DNA polymerase IV low > 71
Dickeya dadantii 3937 0.64 DDA3937_RS05085 tRNA pseudouridine(65) synthase TruC 0.52 DDA3937_RS16575 DNA polymerase IV low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS05425 tRNA pseudouridine(65) synthase TruC 0.52 DZA65_RS17735 DNA polymerase IV low > 75
Enterobacter sp. TBS_079 0.64 MPMX20_03661 tRNA pseudouridine synthase C 0.56 MPMX20_00921 DNA polymerase IV low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF4846 tRNA pseudouridine synthase C (EC 4.2.1.70) 0.53 GFF4104 DNA polymerase IV (EC 2.7.7.7) low > 78
Rahnella sp. WP5 0.63 EX31_RS13065 tRNA pseudouridine(65) synthase TruC 0.55 EX31_RS21005 DNA polymerase IV low > 89
Pectobacterium carotovorum WPP14 0.63 HER17_RS16365 tRNA pseudouridine(65) synthase TruC 0.54 HER17_RS04670 DNA polymerase IV low > 75
Erwinia tracheiphila SCR3 0.63 LU632_RS06295 truC tRNA pseudouridine(65) synthase TruC 0.53 LU632_RS01150 dinB DNA polymerase IV low > 73
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_17320 truC tRNA pseudouridine(65) synthase TruC 0.54 IJEDHG_15455 dinB DNA polymerase IV low > 61
Shewanella sp. ANA-3 0.59 Shewana3_2824 tRNA pseudouridine synthase C (RefSeq) 0.56 Shewana3_0949 DNA polymerase IV (RefSeq) low > 73
Shewanella amazonensis SB2B 0.57 Sama_1131 pseudouridylate synthase (RefSeq) 0.54 Sama_2527 DNA polymerase IV (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_2643 pseudouridylate synthase (RefSeq) 0.54 Shew_2871 DNA polymerase IV (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.50 MIT1002_00998 tRNA pseudouridine synthase C 0.53 MIT1002_03478 DNA polymerase IV low > 70
Dechlorosoma suillum PS 0.50 Dsui_3127 23S RNA-specific pseudouridylate synthase 0.22 Dsui_2075 nucleotidyltransferase/DNA polymerase involved in DNA repair — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_06180 pseudouridylate synthase 0.33 CA264_08955 DNA polymerase IV low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS18680 pseudouridine synthase 0.37 ABZR88_RS20685 DNA polymerase IV — —
Marinobacter adhaerens HP15 0.43 HP15_1021 tRNA pseudouridine synthase C 0.41 HP15_737 DNA polymerase IV low > 73
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS09310 pseudouridylate synthase 0.36 CA265_RS24610 DNA polymerase IV low > 88
Rhodanobacter denitrificans MT42 0.41 LRK55_RS10270 pseudouridine synthase 0.32 LRK55_RS11065 DNA polymerase IV low > 63
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS03400 pseudouridine synthase 0.32 LRK53_RS04225 DNA polymerase IV low > 59
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3112 tRNA pseudouridine synthase C (EC 4.2.1.70) 0.21 Ac3H11_1600 DNA polymerase IV (EC 2.7.7.7) low > 79
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS10630 pseudouridine synthase 0.32 LRK54_RS11335 DNA polymerase IV low > 59
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS13460 pseudouridine synthase 0.31 ABZR86_RS12255 DNA polymerase IV low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3374 Pseudouridylate synthases, 23S RNA-specific 0.19 Echvi_2408 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 79
Lysobacter sp. OAE881 0.35 ABIE51_RS00215 pseudouridine synthase 0.31 ABIE51_RS08465 DNA polymerase IV low > 62
Phocaeicola dorei CL03T12C01 0.20 ABI39_RS02130 RNA pseudouridine synthase 0.35 ABI39_RS09595 DNA polymerase IV low > 72
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS02790 RNA pseudouridine synthase 0.35 HMPREF1058_RS13990 DNA polymerase IV low > 67
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS15835 pseudouridine synthase 0.36 HMPREF1078_RS15010 DNA polymerase IV low > 61

Not shown: 2 genomes with orthologs for CSW01_04555 only; 58 genomes with orthologs for CSW01_11635 only