| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 1.0 | CSW01_07515 | | tail-specific protease | 0.57 | 5 |
| Escherichia coli ECOR38 | 0.62 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | HEPCGN_04865 | prc | carboxy terminal-processing peptidase | low | > 88 |
| Escherichia fergusonii Becca | 0.62 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | EFB2_02171 | | Tail-specific protease | low | > 86 |
| Escherichia coli Nissle 1917 | 0.62 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | ECOLIN_RS10190 | | carboxy terminal-processing peptidase | — | — |
| Enterobacter sp. TBS_079 | 0.62 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.55 | MPMX20_02737 | | Tail-specific protease | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.61 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | 0.57 | GFF2845 | | Tail-specific protease precursor (EC 3.4.21.102) | low | > 78 |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | OKFHMN_26465 | prc | carboxy terminal-processing peptidase | low | > 79 |
| Enterobacter asburiae PDN3 | 0.61 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | 0.55 | EX28DRAFT_0726 | | C-terminal peptidase (prc) | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | KEDOAH_01640 | prc | carboxy terminal-processing peptidase | — | — |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | JDDGAC_01040 | prc | carboxy terminal-processing peptidase | low | > 87 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | MCAODC_18940 | prc | carboxy terminal-processing peptidase | low | > 88 |
| Erwinia amylovora T8 | 0.61 | OLJFJH_01045 | | 1 6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | OLJFJH_13010 | | carboxy terminal-processing peptidase | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | NIAGMN_01595 | prc | carboxy terminal-processing peptidase | low | > 80 |
| Escherichia coli ECRC62 | 0.61 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | BNILDI_15770 | prc | carboxy terminal-processing peptidase | low | > 75 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | NOLOHH_16975 | prc | carboxy terminal-processing peptidase | 0.72 | 74 |
| Alteromonas macleodii MIT1002 | 0.61 | MIT1002_03006 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.52 | MIT1002_02025 | | Tail-specific protease precursor | low | > 70 |
| Escherichia coli BL21 | 0.61 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | 0.57 | ECD_01801 | | carboxy-terminal protease for penicillin-binding protein 3 | low | > 61 |
| Escherichia coli BW25113 | 0.61 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | 0.57 | b1830 | prc | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | OHPLBJKB_01901 | | Tail-specific protease | low | > 74 |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | 0.57 | BWI76_RS17975 | | tail-specific protease | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.60 | KDGMDA_13085 | | 1 6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | KDGMDA_25245 | | carboxy terminal-processing peptidase | 0.82 | 5 |
| Kangiella aquimarina DSM 16071 | 0.60 | B158DRAFT_2134 | | Negative regulator of beta-lactamase expression | 0.39 | B158DRAFT_1732 | | C-terminal peptidase (prc) | low | > 40 |
| Rahnella sp. WP5 | 0.59 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.55 | EX31_RS24880 | | carboxy terminal-processing peptidase | low | > 89 |
| Pantoea sp. MT58 | 0.58 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | IAI47_08705 | | carboxy terminal-processing peptidase | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.58 | PagCFBP13505_RS13160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | PagCFBP13505_RS02535 | | carboxy terminal-processing peptidase | low | > 74 |
| Serratia liquefaciens MT49 | 0.57 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | IAI46_10800 | | carboxy terminal-processing peptidase | low | > 86 |
| Dickeya dianthicola ME23 | 0.56 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | DZA65_RS12505 | | carboxy terminal-processing peptidase | low | > 75 |
| Pseudomonas segetis P6 | 0.56 | MPMX49_03899 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.40 | MPMX49_01745 | | Tail-specific protease | 0.61 | 52 |
| Dickeya dianthicola 67-19 | 0.56 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | HGI48_RS12055 | | carboxy terminal-processing peptidase | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.57 | HER17_RS11690 | | carboxy terminal-processing peptidase | low | > 75 |
| Pseudomonas sp. SVBP6 | 0.56 | COO64_RS03530 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.39 | COO64_RS06980 | | carboxy terminal-processing peptidase | — | — |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.56 | DDA3937_RS11965 | | carboxy terminal-processing peptidase | low | > 74 |
| Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_01470 | | beta-lactamase expression regulator AmpD | 0.40 | IKLFDK_16655 | | tail-specific protease | low | > 100 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | 0.58 | Shewana3_1778 | | carboxy-terminal protease (RefSeq) | low | > 73 |
| Pseudomonas simiae WCS417 | 0.53 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.39 | PS417_09325 | | peptidase S41 | low | > 88 |
| Shewanella oneidensis MR-1 | 0.53 | SO0421 | ampD | AmpD protein (NCBI ptt file) | 0.58 | SO2601 | | carboxyl-terminal protease (NCBI ptt file) | low | > 76 |
| Pseudomonas lactucae CFBP13502 | 0.53 | GEMAOFIL_00991 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.38 | GEMAOFIL_02031 | | Tail-specific protease | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | 0.39 | Pf1N1B4_3741 | | Periplasmic protease | — | — |
| Marinobacter adhaerens HP15 | 0.53 | HP15_1307 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.37 | HP15_1231 | | periplasmic tail-specific proteinase | — | — |
| Pseudomonas sp. RS175 | 0.53 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.39 | PFR28_03169 | | Tail-specific protease | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.38 | PFLU_RS09980 | | peptidase S41 | low | > 109 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | 0.40 | OH686_19710 | | Tail-specific protease precursor | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.38 | PFLU_RS09980 | | peptidase S41 | 0.82 | 27 |
| Pseudomonas sp. DMC3 | 0.53 | GFF4998 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.39 | GFF2584 | | Tail-specific protease | low | > 89 |
| Shewanella loihica PV-4 | 0.53 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | 0.60 | Shew_1802 | | carboxy-terminal protease (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.53 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | 0.59 | Sama_1585 | | carboxy-terminal protease (RefSeq) | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.52 | Psest_0725 | | Negative regulator of beta-lactamase expression | 0.41 | Psest_2951 | | C-terminal peptidase (prc) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | 0.39 | PfGW456L13_4207 | | Periplasmic protease | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.39 | AO356_19335 | | peptidase S41 | low | > 104 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | 0.39 | Psyr_1599 | | C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | 0.38 | Pf6N2E2_5780 | | Periplasmic protease | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | 0.39 | Psyr_1599 | | C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A | low | > 86 |
| Pseudomonas putida KT2440 | 0.51 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | 0.38 | PP_1719 | | Tail-specific protease prc | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.38 | AO353_02440 | | peptidase S41 | low | > 101 |
| Pseudomonas sp. BP01 | 0.51 | JOY50_RS19335 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.38 | JOY50_RS27880 | | carboxy terminal-processing peptidase | low | > 84 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_00043 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.28 | MPMX26_00421 | | Tail-specific protease | low | > 36 |
| Acinetobacter baumannii LAC-4 | 0.49 | RR41_RS18675 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | 0.27 | RR41_RS16485 | | carboxy terminal-processing peptidase | — | — |
Not shown: 18 genomes with orthologs for CSW01_12260 only; 13 genomes with orthologs for CSW01_07515 only