Conservation of cofitness between CSW01_12785 and CSW01_07480 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12785 calcium/sodium antiporter 1.0 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L 0.42 20
Serratia liquefaciens MT49 0.55 IAI46_22440 calcium/sodium antiporter 0.56 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Shewanella loihica PV-4 0.52 Shew_3305 CaCA family Na(+)/Ca(+) antiporter (RefSeq) 0.50 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.51 HER17_RS20030 calcium/sodium antiporter 0.56 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Alteromonas macleodii MIT1002 0.50 MIT1002_00833 Inner membrane protein YrbG 0.44 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Shewanella amazonensis SB2B 0.50 Sama_3082 K+-dependent Na+/Ca+ exchanger related-protein (RefSeq) 0.50 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Rahnella sp. WP5 0.49 EX31_RS12430 calcium/sodium antiporter 0.55 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Erwinia amylovora T8 0.47 OLJFJH_07100 calcium/sodium antiporter 0.55 OLJFJH_15975 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 58
Dickeya dadantii 3937 0.47 DDA3937_RS01560 calcium/sodium antiporter 0.56 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Dickeya dianthicola 67-19 0.47 HGI48_RS01475 calcium/sodium antiporter 0.56 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Dickeya dianthicola ME23 0.47 DZA65_RS01540 calcium/sodium antiporter 0.56 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Pantoea agglomerans CFBP13505 P0401 0.45 PagCFBP13505_RS09320 calcium/sodium antiporter 0.57 PagCFBP13505_RS04640 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Pantoea sp. MT58 0.44 IAI47_17155 calcium/sodium antiporter 0.57 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Enterobacter sp. TBS_079 0.43 MPMX20_04102 Inner membrane protein YrbG 0.56 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Erwinia tracheiphila SCR3 0.42 LU632_RS21250 calcium/sodium antiporter 0.54 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF2940 Inner membrane protein YrbG, predicted calcium/sodium:proton antiporter 0.56 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Enterobacter asburiae PDN3 0.41 EX28DRAFT_3250 K+-dependent Na+/Ca+ exchanger related-protein 0.55 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Klebsiella michiganensis M5al 0.41 BWI76_RS25235 calcium/sodium antiporter 0.55 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Klebsiella pneumoniae MKP103 0.40 KDGMDA_06050 calcium/sodium antiporter 0.55 KDGMDA_18160 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 95
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0953 K+-dependent Na+/Ca+ exchanger related-protein 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Marinobacter adhaerens HP15 0.39 HP15_3123 Na+/Ca+ antiporter, CaCA family 0.38 HP15_1379 RNA methylase low > 73
Pseudomonas stutzeri RCH2 0.38 Psest_3333 K+-dependent Na+/Ca+ exchanger related-protein 0.42 Psest_1949 Predicted N6-adenine-specific DNA methylase low > 67
Escherichia coli BW25113 0.38 b3196 yrbG predicted calcium/sodium:proton antiporter (NCBI) 0.57 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli ECRC102 0.38 NIAGMN_15730 yrbG calcium/sodium antiporter 0.57 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 80
Escherichia coli ECRC101 0.38 MCAODC_08490 yrbG calcium/sodium antiporter 0.57 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00504 Inner membrane protein YrbG 0.57 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 74
Escherichia coli ECRC62 0.38 BNILDI_01765 yrbG calcium/sodium antiporter 0.57 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Escherichia coli ECRC99 0.38 KEDOAH_10180 yrbG calcium/sodium antiporter 0.57 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia fergusonii Becca 0.38 EFB2_00627 Inner membrane protein YrbG 0.57 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18395 calcium/sodium antiporter 0.57 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 55
Escherichia coli ECOR27 0.38 NOLOHH_09770 yrbG calcium/sodium antiporter 0.57 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Escherichia coli ECRC100 0.38 OKFHMN_17970 yrbG calcium/sodium antiporter 0.57 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 79
Escherichia coli ECRC98 0.38 JDDGAC_21595 yrbG calcium/sodium antiporter 0.57 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 87
Escherichia coli BL21 0.38 ECD_03061 putative calcium/sodium:proton antiporter 0.57 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 61
Escherichia coli ECOR38 0.38 HEPCGN_16845 yrbG calcium/sodium antiporter 0.57 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 88
Pseudomonas segetis P6 0.36 MPMX49_03877 hypothetical protein 0.41 MPMX49_03025 Ribosomal RNA large subunit methyltransferase K/L low > 75
Shewanella sp. ANA-3 0.35 Shewana3_3815 CaCA family Na(+)/Ca(+) antiporter (RefSeq) 0.49 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.34 SO0354 sodium/calcium exchanger (NCBI ptt file) 0.49 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_3292 K+-dependent Na+/Ca+ exchanger related-protein 0.40 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_07155 conjugal transfer protein TraR 0.39 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas sp. SVBP6 0.30 COO64_RS04165 calcium/sodium antiporter 0.42 COO64_RS05295 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 93
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_5038 K+-dependent Na+/Ca+ exchanger related-protein 0.41 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_05275 conjugal transfer protein TraR 0.41 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1104 K+-dependent Na+/Ca+ exchanger related-protein 0.41 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens SBW25 0.28 PFLU_RS04280 calcium/sodium antiporter 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS04280 calcium/sodium antiporter 0.41 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_4168 K+-dependent Na+/Ca+ exchanger related-protein 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_4168 K+-dependent Na+/Ca+ exchanger related-protein 0.42 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas simiae WCS417 0.27 PS417_04225 conjugal transfer protein TraR 0.41 PS417_20930 50S rRNA methyltransferase low > 88
Pseudomonas putida KT2440 0.27 PP_0928 K+-dependent Na+/Ca+ exchanger related-protein 0.42 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.26 87
Pseudomonas sp. BP01 0.25 JOY50_RS11010 calcium/sodium antiporter 0.42 JOY50_RS22095 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 84
Pseudomonas lactucae CFBP13502 0.24 GEMAOFIL_01050 Inner membrane protein YrbG 0.42 GEMAOFIL_04331 Ribosomal RNA large subunit methyltransferase K/L low > 93
Lysobacter sp. OAE881 0.18 ABIE51_RS04095 sodium:calcium antiporter 0.37 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62

Not shown: 15 genomes with orthologs for CSW01_12785 only; 13 genomes with orthologs for CSW01_07480 only