Conservation of cofitness between CSW01_03400 and CSW01_05905 in Vibrio cholerae E7946 ATCC 55056

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_05905 DUF72 domain-containing protein 0.49 14
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.44 IAI46_14660 DUF72 domain-containing protein low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.42 DDA3937_RS10050 DUF72 domain-containing protein low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.42 HGI48_RS10080 DUF72 domain-containing protein low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.42 DZA65_RS10490 DUF72 domain-containing protein low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.40 HER17_RS11875 DUF72 domain-containing protein low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.41 BWI76_RS18180 hypothetical protein low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.40 IAI47_08420 DUF72 domain-containing protein low > 76
Erwinia amylovora T8 0.67 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.44 OLJFJH_12830 Protein of unknown function DUF72 low > 58
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.43 ECD_01839 UPF0759 family protein — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.42 JDDGAC_00810 yecE UPF0759 protein YecE low > 86
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.43 HEPCGN_04645 yecE UPF0759 protein YecE low > 87
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.42 KEDOAH_01870 yecE UPF0759 protein YecE — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.41 ECOLIN_RS10685 DUF72 domain-containing protein low > 55
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.42 NIAGMN_01825 yecE UPF0759 protein YecE — —
Escherichia coli ECRC100 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.42 OKFHMN_26235 yecE UPF0759 protein YecE low > 80
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.43 b1868 yecE hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.43 OHPLBJKB_01860 hypothetical protein low > 73
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.43 EFB2_02074 hypothetical protein low > 86
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.42 MCAODC_19170 yecE UPF0759 protein YecE low > 87
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.43 BNILDI_15470 yecE UPF0759 protein YecE low > 75
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.43 NOLOHH_16680 yecE UPF0759 protein YecE low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.43 GFF1649 FIG003003: hypothetical protein low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.44 EX28DRAFT_0689 Uncharacterized conserved protein low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.43 MPMX20_02773 hypothetical protein low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.45 LU632_RS13445 DUF72 domain-containing protein low > 74
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.44 EX31_RS17275 DUF72 domain-containing protein low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.55 Shewana3_0893 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.48 Sama_3238 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.36 MIT1002_01328 hypothetical protein low > 70
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.38 Psest_1561 Uncharacterized conserved protein — —
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.41 PP_1509 conserved protein of unknown function low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.38 Psyr_1322 Protein of unknown function DUF72 low > 86
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.38 Psyr_1322 Protein of unknown function DUF72 low > 86
Pseudomonas sp. DMC3 0.46 GFF4990 tRNA pseudouridine synthase B 0.37 GFF2027 hypothetical protein low > 89
Pseudomonas sp. BP01 0.46 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB 0.42 JOY50_RS26050 DUF72 domain-containing protein low > 84
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.35 PfGW456L13_4736 FIG003003: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.36 AO353_16330 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.37 Pf1N1B4_3055 FIG003003: hypothetical protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.35 Pf6N2E2_3099 FIG003003: hypothetical protein low > 103
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.36 PFR28_00372 hypothetical protein — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.37 OH686_06775 UPF0759 protein YecE low > 80
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.36 AO356_06165 hypothetical protein low > 104
Pseudomonas sp. SVBP6 0.44 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB 0.39 COO64_RS19515 DUF72 domain-containing protein low > 93
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.39 PFLU_RS06150 DUF72 domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.39 PFLU_RS06150 DUF72 domain-containing protein low > 109
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.41 PS417_06080 hypothetical protein — —
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB 0.36 IKLFDK_18805 Protein of unknown function DUF72 low > 101
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B 0.11 H281DRAFT_00638 Uncharacterized conserved protein YecE, DUF72 family low > 103
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.31 Synpcc7942_2024 hypothetical protein low > 38

Not shown: 41 genomes with orthologs for CSW01_03400 only; 4 genomes with orthologs for CSW01_05905 only