Conservation of cofitness between CSW01_05755 and CSW01_04915 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05755 histidinol-phosphate transaminase 1.0 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 14
Dickeya dadantii 3937 0.60 DDA3937_RS09730 histidinol-phosphate transaminase 0.82 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS09740 histidinol-phosphate transaminase 0.82 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 71
Dickeya dianthicola ME23 0.60 DZA65_RS10050 histidinol-phosphate transaminase 0.82 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Pectobacterium carotovorum WPP14 0.60 HER17_RS12235 histidinol-phosphate transaminase 0.81 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC62 0.60 BNILDI_14735 hisC histidinol-phosphate transaminase 0.79 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli BW25113 0.60 b2021 hisC histidinol-phosphate aminotransferase (NCBI) 0.79 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) low > 76
Escherichia coli ECOR27 0.60 NOLOHH_15825 hisC histidinol-phosphate transaminase 0.79 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 75
Escherichia coli ECRC102 0.59 NIAGMN_22455 hisC histidinol-phosphate transaminase 0.79 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Escherichia coli ECRC100 0.59 OKFHMN_24510 hisC histidinol-phosphate transaminase 0.79 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 79
Escherichia coli ECRC101 0.59 MCAODC_20430 hisC histidinol-phosphate transaminase 0.79 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Escherichia coli ECRC99 0.59 KEDOAH_03640 hisC histidinol-phosphate transaminase 0.79 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Escherichia coli ECRC98 0.59 JDDGAC_28620 hisC histidinol-phosphate transaminase 0.79 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Escherichia fergusonii Becca 0.59 EFB2_01835 Histidinol-phosphate aminotransferase 0.79 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 86
Escherichia coli ECOR38 0.59 HEPCGN_03215 hisC histidinol-phosphate transaminase 0.79 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 88
Escherichia coli BL21 0.59 ECD_01923 histidinol-phosphate aminotransferase 0.79 ECD_00629 tRNA-i(6)A37 methylthiotransferase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_01679 Histidinol-phosphate aminotransferase 0.79 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 74
Serratia liquefaciens MT49 0.59 IAI46_08205 histidinol-phosphate transaminase 0.78 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 87
Pantoea agglomerans CFBP13505 P0401 0.59 PagCFBP13516_RS07470 hisC histidinol-phosphate transaminase 0.80 PagCFBP13516_RS14055 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 80
Escherichia coli Nissle 1917 0.59 ECOLIN_RS11950 histidinol-phosphate transaminase 0.79 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Klebsiella michiganensis M5al 0.59 BWI76_RS18930 histidinol-phosphate transaminase 0.79 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB — —
Pantoea sp. MT58 0.58 IAI47_07085 histidinol-phosphate transaminase 0.79 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 76
Erwinia amylovora T8 0.58 OLJFJH_12175 histidinol-phosphate transaminase 0.77 OLJFJH_17145 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 58
Klebsiella pneumoniae MKP103 0.58 KDGMDA_26100 histidinol-phosphate transaminase 0.79 KDGMDA_16495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 94
Klebsiella pneumoniae MRSN742743 0.58 GJGHJB_01689 hisC histidinol-phosphate transaminase 0.79 GJGHJB_03562 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 83
Enterobacter sp. TBS_079 0.58 MPMX20_03003 Histidinol-phosphate aminotransferase 0.76 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase low > 85
Rahnella sp. WP5 0.57 EX31_RS11445 histidinol-phosphate transaminase 0.76 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 89
Enterobacter asburiae PDN3 0.57 EX28DRAFT_0538 histidinol-phosphate aminotransferase 0.77 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF3911 Histidinol-phosphate aminotransferase (EC 2.6.1.9) 0.79 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.51 28
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_19085 hisC histidinol-phosphate transaminase 0.79 IJEDHG_02360 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 61
Erwinia tracheiphila SCR3 0.57 LU632_RS08940 hisC histidinol-phosphate transaminase 0.79 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 73
Alteromonas macleodii MIT1002 0.47 MIT1002_02634 Histidinol-phosphate aminotransferase 0.76 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB low > 70
Shewanella sp. ANA-3 0.46 Shewana3_1852 histidinol phosphate aminotransferase (RefSeq) 0.78 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO2072 hisC histidinol-phosphate aminotransferase (NCBI ptt file) 0.78 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.42 Shew_2199 histidinol-phosphate aminotransferase (RefSeq) 0.78 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) low > 60
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS08465 histidinol-phosphate transaminase 0.63 LRK53_RS14850 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 59
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_04955 hisC histidinol-phosphate transaminase 0.63 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 53
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.2947.1 Histidinol-phosphate aminotransferase (EC 2.6.1.9) 0.63 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase low > 74
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS01600 histidinol-phosphate transaminase 0.63 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS01380 histidinol-phosphate transaminase 0.64 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 63
Shewanella amazonensis SB2B 0.35 Sama_1943 histidinol-phosphate aminotransferase (RefSeq) 0.79 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) low > 62
Lysobacter sp. OAE881 0.32 ABIE51_RS13320 histidinol-phosphate transaminase 0.63 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_05035 histidinol-phosphate transaminase 0.30 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_2458 histidinol-phosphate aminotransferase 0.31 Echvi_2376 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB low > 79
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06725 histidinol-phosphate transaminase 0.64 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS06875 histidinol-phosphate transaminase 0.28 ABZR88_RS18330 MiaB/RimO family radical SAM methylthiotransferase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS03630 histidinol-phosphate transaminase 0.27 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 88
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS02445 histidinol-phosphate transaminase 0.31 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 61
Bacteroides ovatus ATCC 8483 0.29 BACOVA_01233 histidinol-phosphate transaminase 0.32 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB low > 96
Cellulophaga baltica 18 0.29 M666_RS17150 histidinol-phosphate transaminase 0.29 M666_RS02310 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 67
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS04855 histidinol-phosphate transaminase 0.33 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 56
Bacteroides thetaiotaomicron VPI-5482 0.27 BT0202 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) 0.33 BT3195 conserved hypothetical protein (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS15880 histidinol-phosphate transaminase 0.32 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 67
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS11840 histidinol-phosphate transaminase 0.32 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB low > 72

Not shown: 0 genomes with orthologs for CSW01_05755 only; 69 genomes with orthologs for CSW01_04915 only