Conservation of cofitness between CSW01_03170 and CSW01_03435 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03170 ATP-dependent helicase HrpB 1.0 CSW01_03435 protease 0.56 16
Serratia liquefaciens MT49 0.46 IAI46_21195 ATP-dependent helicase HrpB 0.71 IAI46_02015 U32 family peptidase low > 86
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3737 ATP-dependent helicase HrpB 0.72 EX28DRAFT_3207 Collagenase and related proteases low > 76
Rahnella sp. WP5 0.44 EX31_RS03235 ATP-dependent helicase HrpB 0.74 EX31_RS08480 U32 family peptidase low > 89
Escherichia coli ECRC100 0.44 OKFHMN_10330 hrpB ATP-dependent helicase HrpB 0.74 OKFHMN_18175 protease low > 79
Escherichia coli ECRC99 0.44 KEDOAH_17825 hrpB ATP-dependent helicase HrpB 0.74 KEDOAH_09975 protease — —
Escherichia coli ECRC102 0.44 NIAGMN_08180 hrpB ATP-dependent helicase HrpB 0.74 NIAGMN_15935 ubiU Ubiquinone biosynthesis protein UbiU low > 80
Erwinia tracheiphila HP pepo 2.2 0.44 IJEDHG_15075 hrpB ATP-dependent RNA helicase HrpB 0.72 IJEDHG_14005 protease low > 61
Escherichia coli ECRC101 0.44 MCAODC_00845 hrpB ATP-dependent helicase HrpB 0.74 MCAODC_08695 protease low > 88
Escherichia coli ECRC98 0.44 JDDGAC_13925 hrpB ATP-dependent helicase HrpB 0.74 JDDGAC_21800 protease low > 87
Enterobacter sp. TBS_079 0.44 MPMX20_00834 ATP-dependent RNA helicase HrpB 0.72 MPMX20_04062 putative protease YhbU low > 85
Escherichia coli BL21 0.44 ECD_00147 putative ATP-dependent helicase 0.74 ECD_03025 U32 peptidase family protein low > 61
Escherichia fergusonii Becca 0.44 EFB2_03896 ATP-dependent RNA helicase HrpB 0.74 EFB2_00665 putative protease YhbU low > 86
Escherichia coli ECOR38 0.44 HEPCGN_08280 hrpB ATP-dependent helicase HrpB 0.74 HEPCGN_17050 protease low > 88
Klebsiella michiganensis M5al 0.44 BWI76_RS05030 ATP-dependent helicase 0.75 BWI76_RS24970 peptidase U32 low > 92
Klebsiella pneumoniae MKP103 0.44 KDGMDA_13285 ATP-dependent helicase HrpB 0.75 KDGMDA_05840 protease low > 95
Escherichia coli Nissle 1917 0.44 ECOLIN_RS00830 ATP-dependent helicase HrpB 0.74 ECOLIN_RS18140 peptidase U32 family protein low > 55
Escherichia coli BW25113 0.43 b0148 hrpB helicase, ATP-dependent (VIMSS) 0.74 b3158 yhbU predicted peptidase (collagenase-like) (NCBI) low > 76
Escherichia coli ECRC62 0.43 BNILDI_08995 hrpB ATP-dependent helicase HrpB 0.74 BNILDI_01555 ubiU Ubiquinone biosynthesis protein UbiU low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF84 ATP-dependent helicase HrpB 0.74 GFF1510 FIG139552: Putative protease low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_03514 hypothetical protein 0.74 OHPLBJKB_00542 putative protease YhbU low > 74
Pectobacterium carotovorum WPP14 0.43 HER17_RS05595 ATP-dependent helicase HrpB 0.74 HER17_RS18160 U32 family peptidase low > 75
Escherichia coli ECOR27 0.43 NOLOHH_02675 hrpB ATP-dependent helicase HrpB 0.74 NOLOHH_09975 ubiU Ubiquinone biosynthesis protein UbiU low > 76
Dickeya dianthicola 67-19 0.43 HGI48_RS16035 ATP-dependent helicase HrpB 0.73 HGI48_RS03290 U32 family peptidase low > 71
Dickeya dadantii 3937 0.43 DDA3937_RS15920 ATP-dependent helicase HrpB 0.73 DDA3937_RS03115 U32 family peptidase low > 74
Dickeya dianthicola ME23 0.43 DZA65_RS17120 ATP-dependent helicase HrpB 0.73 DZA65_RS03285 U32 family peptidase low > 75
Pantoea sp. MT58 0.41 IAI47_15620 ATP-dependent helicase HrpB 0.72 IAI47_16965 U32 family peptidase low > 76
Pantoea agglomerans CFBP13505 P0401 0.41 PagCFBP13505_RS13385 ATP-dependent helicase HrpB 0.71 PagCFBP13505_RS09060 U32 family peptidase low > 74
Shewanella oneidensis MR-1 0.39 SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) 0.62 SO1249 peptidase, U32 family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.38 Shewana3_0622 ATP-dependent helicase HrpB (RefSeq) 0.62 Shewana3_1065 peptidase U32 (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_5038 ATP-dependent helicase HrpB 0.63 Pf6N2E2_721 FIG139552: Putative protease low > 103
Shewanella amazonensis SB2B 0.37 Sama_2972 ATP-dependent helicase HrpB (RefSeq) 0.60 Sama_0998 U32 family peptidase (RefSeq) low > 62
Pseudomonas simiae WCS417 0.37 PS417_24550 ATP-dependent helicase 0.62 PS417_15755 protease low > 88
Pseudomonas aeruginosa PA14 0.36 IKLFDK_20430 ATP-dependent helicase HrpB 0.65 IKLFDK_20175 protease low > 100
Pseudomonas stutzeri RCH2 0.36 Psest_0629 ATP-dependent helicase HrpB 0.65 Psest_0835 Collagenase and related proteases 0.28 26
Pseudomonas lactucae CFBP13502 0.36 GEMAOFIL_05058 ATP-dependent RNA helicase HrpB 0.63 GEMAOFIL_03433 putative protease YhbU low > 93
Pseudomonas sp. SVBP6 0.36 COO64_RS15435 hrpB ATP-dependent helicase HrpB 0.64 COO64_RS14190 peptidase U32 family protein low > 93
Pseudomonas sp. RS175 0.36 PFR28_03833 ATP-dependent RNA helicase HrpB 0.63 PFR28_02214 putative protease YhbU low > 88
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_15485 ATP-dependent helicase 0.63 AO356_25160 protease low > 104
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_06300 ATP-dependent helicase 0.64 AO353_22050 protease low > 101
Shewanella loihica PV-4 0.35 Shew_3124 ATP-dependent helicase HrpB (RefSeq) 0.62 Shew_2787 peptidase U32 (RefSeq) low > 60
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_2728 ATP-dependent helicase HrpB 0.63 Pf1N1B4_5746 FIG139552: Putative protease low > 87
Sinorhizobium meliloti 1021 0.35 SMc02586 ATP-dependent helicase 0.42 SMa1291 Protease low > 103
Agrobacterium fabrum C58 0.35 Atu0052 helicase 0.41 Atu4397 protease low > 89
Rhodopseudomonas palustris CGA009 0.34 TX73_002770 ATP-dependent helicase HrpB 0.46 TX73_004810 U32 family peptidase — —
Azospirillum sp. SherDot2 0.34 MPMX19_00095 ATP-dependent RNA helicase HrpB 0.45 MPMX19_03049 putative protease YhbU low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS06395 ATP-dependent helicase HrpB 0.46 AMB_RS02530 U32 family peptidase — —
Rhodospirillum rubrum S1H 0.32 Rru_A2365 ATP-dependent helicase HrpB (NCBI) 0.43 Rru_A2525 Peptidase U32 (NCBI) low > 58

Not shown: 34 genomes with orthologs for CSW01_03170 only; 11 genomes with orthologs for CSW01_03435 only