Conservation of cofitness between CSW01_06775 and CSW01_03155 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06775 4-hydroxyphenylpyruvate dioxygenase 1.0 CSW01_03155 RNA polymerase-binding transcription factor DksA 0.62 6
Pseudomonas sp. S08-1 0.68 OH686_21080 4-hydroxyphenylpyruvate dioxygenase 0.70 OH686_17280 RNA polymerase-binding protein DksA — —
Pseudomonas stutzeri RCH2 0.68 Psest_3514 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.68 Psest_1003 RNA polymerase-binding protein DksA — —
Pseudomonas segetis P6 0.67 MPMX49_02855 4-hydroxyphenylpyruvate dioxygenase 0.69 MPMX49_01257 RNA polymerase-binding transcription factor DksA — —
Pseudomonas aeruginosa PUPa3 0.67 DQ20_RS44655 hppD;go_function=4-hydroxyphenylpyruvate 4-hydroxyphenylpyruvate dioxygenase 0.70 DQ20_RS52680 dksA;go_function=enzyme RNA polymerase-binding protein DksA low > 101
Pseudomonas aeruginosa PA14 0.67 IKLFDK_03830 4-hydroxyphenylpyruvate dioxygenase 0.70 IKLFDK_30000 RNA polymerase-binding protein DksA low > 98
Pseudomonas aeruginosa MRSN321 0.67 DY961_RS08155 hppD;go_function=4-hydroxyphenylpyruvate 4-hydroxyphenylpyruvate dioxygenase 0.70 DY961_RS09350 dksA;go_function=enzyme RNA polymerase-binding protein DksA low > 100
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_1446 4-hydroxyphenylpyruvate dioxygenase 0.72 B158DRAFT_0056 transcriptional regulator, TraR/DksA family low > 40
Castellaniella sp019104865 MT123 0.55 ABCV34_RS09775 4-hydroxyphenylpyruvate dioxygenase 0.31 ABCV34_RS13420 RNA polymerase-binding protein DksA — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS03395 4-hydroxyphenylpyruvate dioxygenase 0.33 ABZR87_RS05100 RNA polymerase-binding protein DksA low > 80
Alteromonas macleodii MIT1002 0.51 MIT1002_01553 4-hydroxyphenylpyruvate dioxygenase 0.70 MIT1002_03690 DnaK suppressor protein low > 70
Sinorhizobium meliloti 1021 0.51 SMc03211 4-hydroxyphenylpyruvate dioxygenase 0.35 SMc00469 DnaK suppressor protein — —
Rhodopseudomonas palustris CGA009 0.51 TX73_000025 4-hydroxyphenylpyruvate dioxygenase 0.30 TX73_020255 RNA polymerase-binding protein DksA low > 86
Pseudomonas sp. RS175 0.51 PFR28_02475 4-hydroxyphenylpyruvate dioxygenase 0.68 PFR28_03714 RNA polymerase-binding transcription factor DksA low > 88
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_22845 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.68 AO356_16095 molecular chaperone DnaK low > 104
Pseudomonas sp. DMC3 0.50 GFF2935 4-hydroxyphenylpyruvate dioxygenase 0.68 GFF4034 RNA polymerase-binding transcription factor DksA low > 89
Pseudomonas sp. BP01 0.50 JOY50_RS24385 hppD 4-hydroxyphenylpyruvate dioxygenase 0.68 JOY50_RS27695 dksA RNA polymerase-binding protein DksA low > 84
Caulobacter crescentus NA1000 0.50 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase 0.34 CCNA_02663 DnaK suppressor protein DksA low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase 0.34 CCNA_02663 DnaK suppressor protein DksA low > 67
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_5003 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.68 Pf1N1B4_2862 C4-type zinc finger protein, DksA/TraR family — —
Pseudomonas lactucae CFBP13502 0.50 GEMAOFIL_02938 4-hydroxyphenylpyruvate dioxygenase 0.69 GEMAOFIL_04926 RNA polymerase-binding transcription factor DksA low > 96
Pseudomonas putida KT2440 0.50 PP_3433 4-hydroxyphenylpyruvate dioxygenase 0.64 PP_4693 RNA polymerase-binding transcription factor DksA low > 96
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase 0.67 Psyr_0835 transcriptional regulator, TraR/DksA family low > 86
Pseudomonas orientalis W4I3 0.50 QF045_RS15945 4-hydroxyphenylpyruvate dioxygenase 0.69 QF045_RS26135 RNA polymerase-binding protein DksA low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase 0.67 Psyr_0835 transcriptional regulator, TraR/DksA family low > 86
Pseudomonas sp. SVBP6 0.50 COO64_RS25130 hppD 4-hydroxyphenylpyruvate dioxygenase 0.67 COO64_RS15070 dksA RNA polymerase-binding protein DksA low > 93
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_26925 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.68 AO353_14420 molecular chaperone DnaK low > 101
Pseudomonas simiae WCS417 0.50 PS417_14005 4-hydroxyphenylpyruvate dioxygenase 0.69 PS417_23875 molecular chaperone DnaK — —
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase 0.67 PFLU_RS25715 RNA polymerase-binding protein DksA low > 109
Pseudomonas fluorescens SBW25 0.50 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase 0.67 PFLU_RS25715 RNA polymerase-binding protein DksA low > 109
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_2935 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.67 PfGW456L13_1528 C4-type zinc finger protein, DksA/TraR family low > 87
Phaeobacter inhibens DSM 17395 0.48 PGA1_c07610 4-hydroxyphenylpyruvate dioxygenase Hpd 0.32 PGA1_c11040 dnaK suppressor protein DksA low > 62
Sphingobium sp. HT1-2 0.47 GFF884 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.33 GFF2254 DksA family protein PA5536 (no Zn-finger) low > 95
Brevundimonas sp. GW460-12-10-14-LB2 0.47 A4249_RS11200 4-hydroxyphenylpyruvate dioxygenase 0.34 A4249_RS08530 RNA polymerase-binding protein DksA low > 48
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_2984 4-hydroxyphenylpyruvate dioxygenase 0.32 Ga0059261_0274 transcriptional regulator, TraR/DksA family 0.59 3
Dickeya dadantii 3937 0.45 DDA3937_RS21335 4-hydroxyphenylpyruvate dioxygenase 0.86 DDA3937_RS15935 RNA polymerase-binding protein DksA — —
Dickeya dianthicola 67-19 0.45 HGI48_RS21665 4-hydroxyphenylpyruvate dioxygenase 0.85 HGI48_RS16050 RNA polymerase-binding protein DksA low > 71
Dickeya dianthicola ME23 0.45 DZA65_RS22650 4-hydroxyphenylpyruvate dioxygenase 0.85 DZA65_RS17135 RNA polymerase-binding protein DksA — —
Shewanella amazonensis SB2B 0.41 Sama_1568 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.82 Sama_0780 TraR/DksA family transcriptional regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.39 Shew_2155 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.83 Shew_3129 TraR/DksA family transcriptional regulator (RefSeq) — —
Shewanella oneidensis MR-1 0.39 SO1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.83 SO0874 dksA DnaK suppressor protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.39 Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase (RefSeq) 0.82 Shewana3_3404 TraR/DksA family transcriptional regulator (RefSeq) low > 73

Not shown: 31 genomes with orthologs for CSW01_06775 only; 34 genomes with orthologs for CSW01_03155 only