Conservation of cofitness between CSW01_04845 and CSW01_02525 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_02525 iron-regulated outer membrane virulence protein 0.76 1
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.50 Shewana3_3929 enterobactin receptor protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.51 SO_4523 irgA enterobactin receptor protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.21 MIT1002_00918 Colicin I receptor precursor — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.27 HER17_RS12830 TonB-dependent receptor low > 75
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.28 IAI47_04670 catecholate siderophore receptor CirA low > 76
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.16 EX31_RS08250 TonB-dependent siderophore receptor low > 89
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.17 DDA3937_RS17895 TonB-dependent siderophore receptor low > 74
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.17 PagCFBP13505_RS08210 TonB-dependent siderophore receptor low > 74
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.28 LU632_RS00250 cirA catecholate siderophore receptor CirA low > 74
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.28 IJEDHG_10070 cirA catecholate siderophore receptor CirA low > 61
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.40 IAI46_17185 ligand-gated channel protein low > 86
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.27 KDGMDA_26635 catecholate siderophore receptor CirA low > 95
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.27 ECD_02084 colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter low > 61
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 NIAGMN_03545 iha bifunctional siderophore receptor/adhesin Iha low > 80
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 OKFHMN_04115 iha bifunctional siderophore receptor/adhesin Iha low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.27 OHPLBJKB_01556 Colicin I receptor low > 74
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.30 HEPCGN_11000 ireA TonB-dependent siderophore receptor IreA low > 88
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 JDDGAC_07705 iha bifunctional siderophore receptor/adhesin Iha low > 87
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 KEDOAH_23655 iha bifunctional siderophore receptor/adhesin Iha — —
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 BNILDI_14000 cirA catecholate siderophore receptor CirA low > 75
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.39 MPMX20_03126 Colicin I receptor low > 85
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 MCAODC_23465 iha bifunctional siderophore receptor/adhesin Iha low > 88
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.27 b2155 cirA ferric iron-catecholate outer membrane transporter (NCBI) low > 76
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.27 BWI76_RS19680 catecholate siderophore receptor CirA low > 92
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.27 ECOLIN_RS16645 bifunctional siderophore receptor/adhesin Iha — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.28 GFF3779 Colicin I receptor precursor low > 78
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.27 NOLOHH_15080 cirA catecholate siderophore receptor CirA low > 76
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.27 EX28DRAFT_0401 Outer membrane receptor for ferrienterochelin and colicins low > 76
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.30 EFB2_04431 Colicin I receptor low > 86
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.32 Pf6N2E2_872 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.32 AO356_27385 ligand-gated channel protein low > 104
Pseudomonas segetis P6 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC 0.18 MPMX49_02388 Ferric enterobactin receptor low > 75
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.45 COO64_RS11375 ligand-gated channel protein low > 93
Pseudomonas stutzeri RCH2 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.27 Psest_3341 Outer membrane receptor for ferrienterochelin and colicins low > 67
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.32 PFLU_RS17765 TonB-dependent receptor low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.32 PFLU_RS17765 TonB-dependent receptor low > 109
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.16 JOY50_RS25375 TonB-dependent siderophore receptor low > 84
Pseudomonas putida KT2440 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.17 PP_2242 ferric enterobactin transport system outer membrane subunit low > 96
Marinobacter adhaerens HP15 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.11 HP15_3002 TonB-dependent receptor — —
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.21 IKLFDK_09395 TonB-dependent receptor low > 100
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.16 OKGIIK_05420 TonB-dependent receptor low > 53
Acinetobacter baumannii LAC-4 0.40 RR41_RS05330 D-alanyl-D-alanine carboxypeptidase PBP5/6 0.15 RR41_RS08835 TonB-dependent siderophore receptor low > 55
Acinetobacter radioresistens SK82 0.39 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.14 MPMX26_02344 Ferric enterobactin receptor low > 36
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.09 RPSI07_RS03355 TonB-dependent receptor low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.08 RS_RS20995 TonB-dependent receptor low > 80
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.08 UW163_RS19345 TonB-dependent receptor — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.08 RALBFv3_RS19830 TonB-dependent receptor low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.24 GFF3912 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins low > 90
Azospirillum brasilense Sp245 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.18 AZOBR_RS29530 TonB-dependent receptor — —
Sphingobium sp. HT1-2 0.29 GFF5300 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.36 GFF3042 TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins — —
Sinorhizobium meliloti 1021 0.22 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.06 SMc02890 outer membrane receptor protein — —
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.33 Atu3916 exogenous ferric siderophore receptor low > 89

Not shown: 43 genomes with orthologs for CSW01_04845 only; 4 genomes with orthologs for CSW01_02525 only