Conservation of cofitness between CSW01_07700 and CSW01_01985 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07700 DTW domain-containing protein 1.0 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.39 17
Shewanella oneidensis MR-1 0.43 SO2387 conserved hypothetical protein (NCBI ptt file) 0.72 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.43 Shewana3_1991 DTW domain-containing protein (RefSeq) 0.73 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) — —
Pseudomonas stutzeri RCH2 0.42 Psest_2866 Uncharacterized conserved protein 0.54 Psest_2706 tRNA dihydrouridine synthase A low > 67
Pseudomonas segetis P6 0.41 MPMX49_03326 hypothetical protein 0.53 MPMX49_01913 tRNA-dihydrouridine(20/20a) synthase low > 75
Pseudomonas sp. S08-1 0.41 OH686_18230 Uncharacterized conserved protein YfiP, contains DTW domain 0.56 OH686_22745 tRNA-dihydrouridine(20/20a) synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_16830 hypothetical protein 0.54 AO353_00295 tRNA-dihydrouridine synthase A low > 101
Pseudomonas aeruginosa PA14 0.40 IKLFDK_18410 tRNA-uridine aminocarboxypropyltransferase 0.55 IKLFDK_14145 tRNA dihydrouridine(20/20a) synthase DusA low > 98
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_4663 FIG074102: hypothetical protein 0.50 PfGW456L13_3987 tRNA dihydrouridine synthase A low > 87
Shewanella amazonensis SB2B 0.40 Sama_1748 hypothetical protein (RefSeq) 0.71 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF3576 FIG074102: hypothetical protein 0.50 GFF4791 tRNA dihydrouridine synthase A low > 90
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_3148 FIG074102: hypothetical protein 0.55 Pf1N1B4_57 tRNA dihydrouridine synthase A low > 87
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS14950 tRNA-uridine aminocarboxypropyltransferase 0.56 DY961_RS03075 dusA;go_function=tRNA tRNA dihydrouridine(20/20a) synthase DusA low > 100
Pseudomonas sp. RS175 0.40 PFR28_00477 hypothetical protein 0.54 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase low > 88
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS42180 tRNA-uridine aminocarboxypropyltransferase 0.56 DQ20_RS32515 dusA;go_function=tRNA tRNA dihydrouridine(20/20a) synthase DusA low > 101
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_05645 hypothetical protein 0.54 AO356_02170 tRNA-dihydrouridine synthase A low > 104
Klebsiella michiganensis M5al 0.39 BWI76_RS21395 DTW domain-containing protein 0.75 BWI76_RS01900 tRNA-dihydrouridine synthase A low > 92
Escherichia coli Nissle 1917 0.39 ECOLIN_RS14620 tRNA-uridine aminocarboxypropyltransferase 0.75 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia fergusonii Becca 0.39 EFB2_01313 hypothetical protein 0.75 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_01123 hypothetical protein 0.75 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase low > 74
Escherichia coli BW25113 0.39 b2583 yfiP orf, hypothetical protein (VIMSS) 0.75 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) low > 76
Escherichia coli ECRC98 0.39 JDDGAC_24990 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia coli ECRC99 0.39 KEDOAH_06895 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli ECRC100 0.39 OKFHMN_21325 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 79
Escherichia coli ECRC101 0.39 MCAODC_11855 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia coli ECRC102 0.39 NIAGMN_19095 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 80
Escherichia coli ECRC62 0.39 BNILDI_11800 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 75
Pseudomonas sp. DMC3 0.39 GFF2116 hypothetical protein 0.57 GFF1327 tRNA-dihydrouridine(20/20a) synthase low > 89
Escherichia coli ECOR38 0.39 HEPCGN_20450 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 88
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0064 Uncharacterized conserved protein 0.75 EX28DRAFT_4263 tRNA dihydrouridine synthase A low > 76
Escherichia coli ECOR27 0.39 NOLOHH_12995 tapT tRNA-uridine aminocarboxypropyltransferase 0.75 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.41 73
Escherichia coli BL21 0.39 ECD_02477 DTW domain protein 0.75 ECD_03921 tRNA-dihydrouridine synthase A low > 61
Pseudomonas sp. BP01 0.39 JOY50_RS23805 tRNA-uridine aminocarboxypropyltransferase 0.56 JOY50_RS25205 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 84
Pseudomonas putida KT2440 0.39 PP_1634 conserved protein 0.58 PP_2169 tRNA-dihydrouridine synthase A low > 96
Shewanella loihica PV-4 0.38 Shew_1966 DTW domain-containing protein (RefSeq) 0.72 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS05905 DTW domain-containing protein 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.14 78
Pseudomonas fluorescens SBW25 0.38 PFLU_RS05905 DTW domain-containing protein 0.55 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF2097 hypothetical protein 0.75 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) low > 78
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1285 FIG074102: hypothetical protein 0.52 Ac3H11_2288 tRNA dihydrouridine synthase A low > 79
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_01338 hypothetical protein 0.54 GEMAOFIL_01679 tRNA-dihydrouridine(20/20a) synthase low > 96
Enterobacter sp. TBS_079 0.38 MPMX20_03452 hypothetical protein 0.75 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase low > 85
Pseudomonas simiae WCS417 0.37 PS417_05835 hypothetical protein 0.55 PS417_07740 tRNA-dihydrouridine synthase A low > 88
Pectobacterium carotovorum WPP14 0.37 HER17_RS04435 DTW domain-containing protein 0.75 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Pseudomonas sp. SVBP6 0.37 COO64_RS19955 tRNA-uridine aminocarboxypropyltransferase 0.54 COO64_RS09565 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 93
Pantoea sp. MT58 0.37 IAI47_04480 DTW domain-containing protein 0.76 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA low > 76
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS14475 DTW domain-containing protein 0.75 PagCFBP13505_RS21190 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Klebsiella pneumoniae MKP103 0.36 KDGMDA_28520 tRNA-uridine aminocarboxypropyltransferase 0.73 KDGMDA_10355 tRNA dihydrouridine(20/20a) synthase DusA low > 95
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_1382 DTW 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_1382 DTW 0.56 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_2987 FIG074102: hypothetical protein 0.54 Pf6N2E2_2257 tRNA dihydrouridine synthase A low > 103
Alteromonas macleodii MIT1002 0.35 MIT1002_02148 hypothetical protein 0.58 MIT1002_03387 putative tRNA-dihydrouridine synthase low > 70
Serratia liquefaciens MT49 0.35 IAI46_20020 DTW domain-containing protein 0.77 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA low > 87
Dickeya dianthicola 67-19 0.35 HGI48_RS16850 DTW domain-containing protein 0.74 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS17925 DTW domain-containing protein 0.75 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Dickeya dadantii 3937 0.34 DDA3937_RS16780 DTW domain-containing protein 0.75 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Erwinia amylovora T8 0.34 OLJFJH_09785 DTW domain-containing protein 0.76 OLJFJH_03475 tRNA dihydrouridine(20/20a) synthase DusA low > 58
Variovorax sp. SCN45 0.33 GFF6490 Uncharacterized conserved protein YfiP, contains DTW domain 0.51 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) low > 127
Rahnella sp. WP5 0.33 EX31_RS13675 DTW domain-containing protein 0.76 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA low > 89

Not shown: 1 genomes with orthologs for CSW01_07700 only; 42 genomes with orthologs for CSW01_01985 only