Conservation of cofitness between CSW01_04525 and CSW01_00785 in Vibrio cholerae E7946 ATCC 55056

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04525 DUF188 domain-containing protein 1.0 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.50 2
Pectobacterium carotovorum WPP14 0.70 HER17_RS17270 YaiI/YqxD family protein 0.67 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Rahnella sp. WP5 0.70 EX31_RS20265 YaiI/YqxD family protein 0.65 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 89
Shewanella amazonensis SB2B 0.69 Sama_3557 hypothetical protein (RefSeq) 0.67 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2726 hypothetical protein (RefSeq) 0.67 Shew_0138 tRNA (uracil-5-)-methyltransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.66 IAI46_18550 YaiI/YqxD family protein 0.65 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13505_RS10210 YaiI/YqxD family protein 0.68 PagCFBP13505_RS18390 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Pantoea sp. MT58 0.65 IAI47_14940 YaiI/YqxD family protein 0.68 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_26185 YaiI/YqxD family protein 0.67 IJEDHG_13145 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 61
Erwinia tracheiphila SCR3 0.64 LU632_RS18985 YaiI/YqxD family protein 0.67 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 73
Dickeya dadantii 3937 0.63 DDA3937_RS04360 YaiI/YqxD family protein 0.66 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Dickeya dianthicola 67-19 0.63 HGI48_RS04350 YaiI/YqxD family protein 0.66 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS04270 YaiI/YqxD family protein 0.66 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Klebsiella pneumoniae MKP103 0.62 KDGMDA_14255 YaiI/YqxD family protein 0.65 KDGMDA_09400 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 95
Klebsiella michiganensis M5al 0.62 BWI76_RS06175 DUF188 domain-containing protein 0.65 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.17 50
Escherichia coli BW25113 0.61 b0387 yaiI orf, hypothetical protein (VIMSS) 0.65 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia coli ECRC100 0.61 OKFHMN_08605 yaiI YaiI/YqxD family protein 0.65 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 79
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2584 Uncharacterized protein conserved in bacteria 0.64 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase — —
Escherichia coli ECRC98 0.61 JDDGAC_12260 yaiI YaiI/YqxD family protein 0.65 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli ECRC99 0.61 KEDOAH_19360 yaiI YaiI/YqxD family protein 0.65 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC62 0.61 BNILDI_22945 yaiI YaiI/YqxD family protein 0.65 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli Nissle 1917 0.61 ECOLIN_RS02350 YaiI/YqxD family protein 0.65 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03287 hypothetical protein 0.65 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 74
Escherichia coli ECRC102 0.61 NIAGMN_06660 yaiI YaiI/YqxD family protein 0.65 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECOR27 0.61 NOLOHH_01530 yaiI YaiI/YqxD family protein 0.65 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Escherichia coli BL21 0.61 ECD_00334 UPF0178 family protein 0.65 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase low > 61
Escherichia coli ECRC101 0.61 MCAODC_27830 yaiI YaiI/YqxD family protein 0.65 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli ECOR38 0.61 HEPCGN_07245 yaiI YaiI/YqxD family protein 0.65 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 88
Enterobacter sp. TBS_079 0.61 MPMX20_00977 hypothetical protein 0.65 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Dechlorosoma suillum PS 0.60 Dsui_0282 hypothetical protein 0.48 Dsui_2239 tRNA (uracil-5-)-methyltransferase low > 51
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF4285 Protein YaiI 0.64 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Alteromonas macleodii MIT1002 0.57 MIT1002_02273 hypothetical protein 0.61 MIT1002_03370 tRNA (uracil(54)-C(5))-methyltransferase low > 70
Acinetobacter baumannii LAC-4 0.56 RR41_RS04535 YaiI/YqxD family protein 0.58 RR41_RS11900 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 55
Shewanella sp. ANA-3 0.56 Shewana3_1627 hypothetical protein (RefSeq) 0.65 Shewana3_0179 tRNA (uracil-5-)-methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.55 SO2894 YaiI/YqxD family protein (NCBI ptt file) 0.65 SO0206 trmA tRNA (uracil-5-)-methyltransferase (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.54 MPMX26_02216 hypothetical protein 0.57 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 36
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_4448 probable P23 protein 0.49 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 103
Pseudomonas sp. S08-1 0.39 OH686_13970 Protein YaiI 0.48 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_12870 hypothetical protein 0.49 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas stutzeri RCH2 0.38 Psest_3736 Uncharacterized protein conserved in bacteria 0.50 Psest_3451 tRNA (uracil-5-)-methyltransferase low > 67
Pseudomonas sp. DMC3 0.38 GFF340 hypothetical protein 0.48 GFF3938 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 89
Pseudomonas putida KT2440 0.38 PP_5221 conserved protein of unknown function, UPF0178 family 0.48 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96
Pseudomonas simiae WCS417 0.38 PS417_27460 hypothetical protein 0.49 PS417_24385 tRNA (uracil-5-)-methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2203 probable P23 protein 0.48 Pf1N1B4_2754 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_869 probable P23 protein 0.49 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas sp. BP01 0.37 JOY50_RS22565 YaiI/YqxD family protein 0.48 JOY50_RS27500 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 84
Pseudomonas orientalis W4I3 0.37 QF045_RS01825 YaiI/YqxD family protein 0.49 QF045_RS26680 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 93
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_08910 hypothetical protein 0.50 AO353_13905 tRNA (uracil-5-)-methyltransferase low > 101
Pseudomonas aeruginosa PA14 0.37 IKLFDK_27225 YaiI/YqxD family protein 0.47 IKLFDK_30015 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 98
Pseudomonas aeruginosa PUPa3 0.37 DQ20_RS50010 YaiI/YqxD family protein 0.47 DQ20_RS52695 trmA;go_function=tRNA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 101
Pseudomonas segetis P6 0.36 MPMX49_04509 hypothetical protein 0.51 MPMX49_03997 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 75
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS29120 YaiI/YqxD family protein 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas sp. SVBP6 0.36 COO64_RS01105 YaiI/YqxD family protein 0.49 COO64_RS02860 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 93
Pseudomonas aeruginosa MRSN321 0.36 DY961_RS12110 YaiI/YqxD family protein 0.47 DY961_RS09335 trmA;go_function=S-adenosylmethionine-dependent tRNA (uridine(54)-C5)-methyltransferase TrmA low > 100
Pseudomonas fluorescens SBW25 0.36 PFLU_RS29120 YaiI/YqxD family protein 0.50 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas lactucae CFBP13502 0.33 GEMAOFIL_05627 hypothetical protein 0.49 GEMAOFIL_05030 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96

Not shown: 29 genomes with orthologs for CSW01_04525 only; 5 genomes with orthologs for CSW01_00785 only