Conservation of cofitness between CSW01_12705 and CSW01_00450 in Vibrio cholerae E7946 ATCC 55056

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12705 RNA polymerase-associated protein RapA 1.0 CSW01_00450 SCP2 domain-containing protein 0.61 11
Serratia liquefaciens MT49 0.67 IAI46_03275 RNA polymerase-associated protein RapA 0.34 IAI46_01070 SCP2 domain-containing protein low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.35 GFF261 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes low > 78
Dickeya dadantii 3937 0.65 DDA3937_RS18235 RNA polymerase-associated protein RapA 0.36 DDA3937_RS20325 SCP2 domain-containing protein — —
Rahnella sp. WP5 0.65 EX31_RS03745 RNA polymerase-associated protein RapA 0.34 EX31_RS14620 SCP2 domain-containing protein 0.72 32
Escherichia coli ECRC100 0.65 OKFHMN_10800 rapA RNA polymerase-associated protein RapA 0.33 OKFHMN_14300 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli BL21 0.65 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.34 ECD_03727 aerobic ubiquinone synthesis protein, SCP2 family protein low > 61
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00315 RNA polymerase-associated protein RapA 0.33 ECOLIN_RS22120 ubiquinone biosynthesis protein UbiJ low > 55
Escherichia coli ECOR27 0.65 NOLOHH_03145 rapA RNA polymerase-associated protein RapA 0.34 NOLOHH_06430 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli BW25113 0.65 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.34 b3834 yigP hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03599 RNA polymerase-associated protein RapA 0.34 OHPLBJKB_04217 hypothetical protein low > 74
Escherichia coli ECRC62 0.65 BNILDI_08460 rapA RNA polymerase-associated protein RapA 0.34 BNILDI_05100 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC98 0.65 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.33 JDDGAC_17925 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC99 0.65 KEDOAH_17355 rapA RNA polymerase-associated protein RapA 0.33 KEDOAH_13850 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC101 0.65 MCAODC_01315 rapA RNA polymerase-associated protein RapA 0.33 MCAODC_04805 ubiJ ubiquinone biosynthesis protein UbiJ — —
Enterobacter sp. TBS_079 0.65 MPMX20_00753 RNA polymerase-associated protein RapA 0.35 MPMX20_04446 Ubiquinone biosynthesis accessory factor UbiJ — —
Escherichia coli ECRC102 0.65 NIAGMN_08650 rapA RNA polymerase-associated protein RapA 0.33 NIAGMN_12055 ubiJ ubiquinone biosynthesis protein UbiJ — —
Dickeya dianthicola 67-19 0.65 HGI48_RS18170 RNA polymerase-associated protein RapA 0.36 HGI48_RS00900 SCP2 domain-containing protein — —
Klebsiella michiganensis M5al 0.65 BWI76_RS04570 RNA polymerase-associated protein RapA 0.35 BWI76_RS01310 SCP2 domain-containing protein — —
Klebsiella pneumoniae MKP103 0.65 KDGMDA_12795 RNA polymerase-associated protein RapA 0.35 KDGMDA_09800 Ubiquinone biosynthesis accessory factor UbiJ — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family 0.35 EX28DRAFT_4499 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli ECOR38 0.64 HEPCGN_08790 rapA RNA polymerase-associated protein RapA 0.33 HEPCGN_12930 ubiJ ubiquinone biosynthesis protein UbiJ low > 88
Escherichia fergusonii Becca 0.64 EFB2_03986 RNA polymerase-associated protein RapA 0.33 EFB2_04781 Ubiquinone biosynthesis accessory factor UbiJ low > 86
Dickeya dianthicola ME23 0.64 DZA65_RS19310 RNA polymerase-associated protein RapA 0.36 DZA65_RS00960 SCP2 domain-containing protein — —
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS12940 RNA polymerase-associated protein RapA 0.35 PagCFBP13505_RS15260 SCP2 domain-containing protein — —
Pantoea sp. MT58 0.64 IAI47_16055 RNA polymerase-associated protein RapA 0.33 IAI47_18280 SCP2 domain-containing protein — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS02990 RNA polymerase-associated protein RapA 0.28 HER17_RS20605 SCP2 domain-containing protein — —
Erwinia amylovora T8 0.63 OLJFJH_01340 RNA polymerase-associated protein RapA 0.35 OLJFJH_06505 Ubiquinone biosynthesis accessory factor UbiJ — —
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_06075 RNA polymerase-associated protein RapA 0.33 IJEDHG_08645 Ubiquinone biosynthesis accessory factor UbiJ — —
Erwinia tracheiphila SCR3 0.62 LU632_RS02805 rapA RNA polymerase-associated protein RapA 0.33 LU632_RS24000 SCP2 domain-containing protein — —
Shewanella sp. ANA-3 0.61 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) 0.26 Shewana3_3726 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.61 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) 0.28 SO4200 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.60 Sama_3131 ATP-dependent helicase HepA (RefSeq) 0.23 Sama_3203 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.60 Shew_0457 ATP-dependent helicase HepA (RefSeq) 0.31 Shew_3374 hypothetical protein (RefSeq) low > 60
Pseudomonas sp. RS175 0.46 PFR28_00612 RNA polymerase-associated protein RapA 0.12 PFR28_04988 Ubiquinone biosynthesis accessory factor UbiJ — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.12 Pf6N2E2_3780 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Pseudomonas segetis P6 0.46 MPMX49_03288 RNA polymerase-associated protein RapA 0.14 MPMX49_04259 Ubiquinone biosynthesis accessory factor UbiJ — —
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.12 Pf1N1B4_1563 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) 0.12 PfGW456L13_300 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Pseudomonas orientalis W4I3 0.46 QF045_RS09435 RNA polymerase-associated protein RapA 0.12 QF045_RS04925 SCP2 domain-containing protein low > 93
Pseudomonas stutzeri RCH2 0.46 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family 0.15 Psest_3941 Uncharacterized protein conserved in bacteria — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.12 PFLU_RS01910 sterol-binding protein low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS06675 RNA polymerase-associated protein RapA 0.12 PFLU_RS01910 sterol-binding protein low > 109
Pseudomonas sp. BP01 0.46 JOY50_RS24235 rapA RNA polymerase-associated protein RapA 0.12 JOY50_RS09630 SCP2 domain-containing protein low > 84
Pseudomonas simiae WCS417 0.45 PS417_06645 RNA polymerase-associated protein RapA 0.13 PS417_01865 sterol-binding protein — —
Alteromonas macleodii MIT1002 0.44 MIT1002_00659 RNA polymerase-associated protein RapA 0.26 MIT1002_03630 SCP-2 sterol transfer family protein — —
Marinobacter adhaerens HP15 0.41 HP15_3376 RNA polymerase-associated protein RapA 0.12 HP15_3192 protein containing sterol-binding domain low > 73
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_09865 rapA RNA polymerase-associated protein RapA 0.20 OKGIIK_13260 ubiJ sterol-binding protein — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS02635 RNA polymerase-associated protein RapA 0.19 LRK55_RS10280 SCP2 sterol-binding domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS02885 RNA polymerase-associated protein RapA 0.20 LRK54_RS10640 SCP2 sterol-binding domain-containing protein low > 59
Rhodanobacter sp000427505 FW510-R12 0.31 LRK53_RS07105 RNA polymerase-associated protein RapA 0.19 LRK53_RS03410 SCP2 sterol-binding domain-containing protein low > 59
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS09245 RNA polymerase-associated protein RapA 0.17 ABZR86_RS13450 SCP2 sterol-binding domain-containing protein — —

Not shown: 14 genomes with orthologs for CSW01_12705 only; 5 genomes with orthologs for CSW01_00450 only