| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | 1.0 | BWI76_RS08500 | | cytochrome d ubiquinol oxidase subunit 2 | 0.30 | 11 |
| Escherichia coli ECRC99 | 0.91 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | KEDOAH_21125 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli ECRC100 | 0.91 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | OKFHMN_06840 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli Nissle 1917 | 0.91 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | 0.91 | ECOLIN_RS03905 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli ECRC98 | 0.91 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | JDDGAC_10495 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia fergusonii Becca | 0.91 | EFB2_00657 | | tRNA pseudouridine synthase B | 0.91 | EFB2_03373 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | — | — |
| Escherichia coli BL21 | 0.91 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.91 | ECD_00693 | | cytochrome d terminal oxidase, subunit II | — | — |
| Escherichia coli ECRC102 | 0.91 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | NIAGMN_04890 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli BW25113 | 0.91 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | 0.91 | b0734 | cydB | cytochrome d terminal oxidase, subunit II (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.91 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | 0.91 | OHPLBJKB_02980 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | — | — |
| Escherichia coli ECOR38 | 0.91 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | HEPCGN_01430 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli ECRC101 | 0.91 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | MCAODC_26060 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.91 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.91 | GFF4647 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 78 |
| Escherichia coli ECRC62 | 0.91 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | BNILDI_21270 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Escherichia coli ECOR27 | 0.91 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | 0.91 | NOLOHH_23275 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | 0.88 | EX28DRAFT_2258 | | cytochrome d oxidase, subunit II (cydB) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_04071 | | tRNA pseudouridine synthase B | 0.92 | MPMX20_01362 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | low | > 85 |
| Serratia liquefaciens MT49 | 0.79 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | 0.77 | IAI46_06300 | | cytochrome d ubiquinol oxidase subunit II | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.79 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | 0.84 | HER17_RS14900 | | cytochrome d ubiquinol oxidase subunit II | low | > 75 |
| Dickeya dadantii 3937 | 0.79 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.82 | DDA3937_RS06485 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | 0.82 | HGI48_RS06525 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Dickeya dianthicola ME23 | 0.76 | DZA65_RS03245 | | tRNA pseudouridine(55) synthase TruB | 0.82 | DZA65_RS06875 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Pantoea sp. MT58 | 0.76 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | 0.82 | IAI47_13720 | | cytochrome d ubiquinol oxidase subunit II | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.75 | LU632_RS21050 | truB | tRNA pseudouridine(55) synthase TruB | 0.80 | LU632_RS16060 | cydB | cytochrome d ubiquinol oxidase subunit II | — | — |
| Rahnella sp. WP5 | 0.74 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.77 | EX31_RS23465 | | cytochrome d ubiquinol oxidase subunit II | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_03400 | | tRNA pseudouridine(55) synthase TruB | 0.63 | CSW01_09230 | | cytochrome d ubiquinol oxidase subunit II | — | — |
| Shewanella amazonensis SB2B | 0.64 | Sama_0963 | | pseudouridylate synthase (RefSeq) | 0.65 | Sama_2348 | | cytochrome bd-I oxidase subunit II (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_1032 | | tRNA pseudouridine synthase B (RefSeq) | 0.67 | Shewana3_1242 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.60 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | 0.67 | Shew_1303 | | cytochrome d ubiquinol oxidase, subunit II (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_01773 | | tRNA pseudouridine synthase B | 0.58 | MIT1002_03848 | | Cytochrome d ubiquinol oxidase subunit 2 | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0983 | | tRNA pseudouridine 55 synthase | 0.53 | Psest_3024 | | cytochrome d oxidase, subunit II (cydB) | — | — |
| Dechlorosoma suillum PS | 0.41 | Dsui_2720 | | tRNA pseudouridine 55 synthase | 0.57 | Dsui_1916 | | cytochrome d oxidase cyd, subunit II | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS17985 | | tRNA pseudouridine synthase B | 0.53 | HSERO_RS15345 | | cytochrome BD oxidase subunit II | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.38 | QEN71_RS23090 | | tRNA pseudouridine(55) synthase TruB | 0.52 | QEN71_RS01610 | | cytochrome d ubiquinol oxidase subunit II | low | > 153 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_02778 | | tRNA pseudouridine synthase B | 0.53 | MPMX26_01624 | | Cytochrome bd-I ubiquinol oxidase subunit 2 | — | — |
| Burkholderia phytofirmans PsJN | 0.38 | BPHYT_RS08080 | | tRNA pseudouridine synthase B | 0.52 | BPHYT_RS02760 | | cytochrome BD oxidase subunit II | low | > 109 |
| Rhodanobacter sp. FW510-T8 | 0.36 | OKGIIK_05860 | truB | tRNA pseudouridine(55) synthase TruB | 0.39 | OKGIIK_12190 | cydB | cytochrome d ubiquinol oxidase subunit II | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.36 | LRK55_RS00810 | | tRNA pseudouridine(55) synthase TruB | 0.41 | LRK55_RS11430 | | cytochrome d ubiquinol oxidase subunit II | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS01035 | | tRNA pseudouridine(55) synthase TruB | 0.41 | LRK54_RS11705 | | cytochrome d ubiquinol oxidase subunit II | low | > 59 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.46 | Xcc-8004.2332.1 | | Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS06015 | | tRNA pseudouridine(55) synthase TruB | 0.42 | ABZR86_RS11960 | | cytochrome d ubiquinol oxidase subunit II | low | > 74 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | 0.48 | ABIE40_RS20495 | | cytochrome d ubiquinol oxidase subunit II | low | > 107 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.46 | CCNA_00801 | | cytochrome bd-type quinol oxidase, subunit 2 cydB | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.46 | CCNA_00801 | | cytochrome bd-type quinol oxidase, subunit 2 cydB | low | > 66 |
| Agrobacterium fabrum C58 | 0.28 | Atu0085 | | tRNA pseudouridine 55 synthase | 0.51 | Atu4092 | | cytochrome d oxidase subunit II | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_2142 | | tRNA pseudouridine(55) synthase | 0.46 | Ga0059261_3823 | | cytochrome d oxidase, subunit II (cydB) | low | > 68 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.22 | DVU0505 | truB | tRNA pseudouridine synthase B (TIGR) | 0.28 | DVU3270 | cydB | cytochrome d ubiquinol oxidase, subunit II (TIGR) | low | > 55 |
Not shown: 36 genomes with orthologs for BWI76_RS25080 only; 12 genomes with orthologs for BWI76_RS08500 only