Conservation of cofitness between BPHYT_RS16845 and BPHYT_RS16855 in Burkholderia phytofirmans PsJN

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16845 spermidine synthase 1.0 BPHYT_RS16855 16S rRNA methyltransferase 0.27 7
Paraburkholderia bryophila 376MFSha3.1 0.78 H281DRAFT_06313 spermidine synthase (EC 2.5.1.16) 0.86 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.76 ABIE53_003538 spermidine synthase 0.86 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase 0.34 9
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS17580 spermidine synthase 0.57 RR42_RS17590 16S rRNA methyltransferase low > 128
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_02195 spermidine synthase 0.33 AO353_08050 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_4155 Spermidine synthase (EC 2.5.1.16) 0.33 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Rahnella sp. WP5 0.27 EX31_RS03375 polyamine aminopropyltransferase 0.37 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_1864 spermidine synthase 0.34 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.33 40
Dickeya dianthicola ME23 0.27 DZA65_RS17215 polyamine aminopropyltransferase 0.35 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_1864 spermidine synthase 0.34 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Serratia liquefaciens MT49 0.26 IAI46_21290 polyamine aminopropyltransferase 0.36 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Dickeya dianthicola 67-19 0.26 HGI48_RS16130 polyamine aminopropyltransferase 0.35 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Rhodospirillum rubrum S1H 0.26 Rru_A1691 Spermine synthase (NCBI) 0.14 Rru_A0571 hypothetical protein (NCBI) low > 58
Dickeya dadantii 3937 0.26 DDA3937_RS16010 polyamine aminopropyltransferase 0.36 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Pseudomonas sp. S08-1 0.26 OH686_03215 spermidine synthase 0.34 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4910.1 Spermidine synthase (EC 2.5.1.16) 0.34 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) — —
Marinobacter adhaerens HP15 0.25 HP15_273 spermidine synthase 0.37 HP15_2926 ribosomal RNA small subunit methyltransferase E low > 73
Pantoea sp. MT58 0.25 IAI47_15710 polyamine aminopropyltransferase 0.35 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Escherichia coli ECRC101 0.25 MCAODC_00980 speE polyamine aminopropyltransferase 0.36 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli Nissle 1917 0.25 ECOLIN_RS00675 polyamine aminopropyltransferase 0.36 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 55
Escherichia coli ECRC102 0.25 NIAGMN_08315 speE polyamine aminopropyltransferase 0.36 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli ECRC100 0.25 OKFHMN_10465 speE polyamine aminopropyltransferase 0.36 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli ECOR27 0.25 NOLOHH_02810 speE polyamine aminopropyltransferase 0.36 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli BW25113 0.25 b0121 speE spermidine synthase (NCBI) 0.36 b2946 yggJ orf, hypothetical protein (VIMSS) 0.30 11
Escherichia coli ECRC62 0.25 BNILDI_08800 speE polyamine aminopropyltransferase 0.36 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Pseudomonas stutzeri RCH2 0.25 Psest_1911 spermidine synthase 0.33 Psest_0305 RNA methyltransferase, RsmE family low > 67
Escherichia coli ECRC99 0.25 KEDOAH_17690 speE polyamine aminopropyltransferase 0.36 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_03540 Polyamine aminopropyltransferase 0.36 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 73
Escherichia fergusonii Becca 0.25 EFB2_03924 Polyamine aminopropyltransferase 0.36 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli ECRC98 0.25 JDDGAC_14060 speE polyamine aminopropyltransferase 0.36 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Escherichia coli ECOR38 0.25 HEPCGN_08445 speE polyamine aminopropyltransferase 0.36 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Escherichia coli BL21 0.25 ECD_00120 spermidine synthase (putrescine aminopropyltransferase) 0.36 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent low > 61
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS15575 polyamine aminopropyltransferase 0.36 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF107 Spermidine synthase (EC 2.5.1.16) 0.34 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Klebsiella michiganensis M5al 0.25 BWI76_RS04925 spermidine synthase 0.33 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Enterobacter sp. TBS_079 0.25 MPMX20_00815 Polyamine aminopropyltransferase 0.34 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_15620 speE polyamine aminopropyltransferase 0.33 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Pectobacterium carotovorum WPP14 0.25 HER17_RS05505 polyamine aminopropyltransferase 0.32 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS09135 polyamine aminopropyltransferase 0.37 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Rhodanobacter denitrificans MT42 0.25 LRK55_RS08665 polyamine aminopropyltransferase 0.36 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase — —
Enterobacter asburiae PDN3 0.25 EX28DRAFT_3718 spermidine synthase 0.34 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76
Erwinia tracheiphila SCR3 0.24 LU632_RS20150 speE polyamine aminopropyltransferase 0.37 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Azospirillum brasilense Sp245 0.24 AZOBR_RS02020 spermidine synthase 0.15 AZOBR_RS11890 16S rRNA methyltransferase low > 97
Shewanella amazonensis SB2B 0.21 Sama_1964 spermidine synthase (RefSeq) 0.37 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_1810 spermidine synthase 0.37 B158DRAFT_0180 RNA methyltransferase, RsmE family low > 40

Not shown: 2 genomes with orthologs for BPHYT_RS16845 only; 51 genomes with orthologs for BPHYT_RS16855 only