Conservation of cofitness between Atu1739 and Atu0044 in Agrobacterium fabrum C58

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1739 permease 1.0 Atu0044 heat shock protein hslV 0.43 4
Rhizobium sp. OAE497 0.69 ABIE40_RS09660 AI-2E family transporter 0.86 ABIE40_RS19465 ATP-dependent protease subunit HslV low > 107
Sinorhizobium meliloti 1021 0.67 SMc02160 ABC transporter permease 0.91 SMc02575 ATP-dependent protease peptidase subunit — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF3026 putative membrane protein 0.62 GFF552 ATP-dependent protease HslV (EC 3.4.25.-) low > 90
Shewanella sp. ANA-3 0.51 Shewana3_0477 hypothetical protein (RefSeq) 0.61 Shewana3_3699 ATP-dependent protease peptidase subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO0472 membrane protein, putative (NCBI ptt file) 0.61 SO4162 hslV ATP-dependent protease HslV (NCBI ptt file) low > 76
Paraburkholderia bryophila 376MFSha3.1 0.20 H281DRAFT_05390 Predicted PurR-regulated permease PerM 0.61 H281DRAFT_02206 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B low > 103
Paraburkholderia graminis OAS925 0.20 ABIE53_006439 putative PurR-regulated permease PerM 0.61 ABIE53_000422 ATP-dependent HslUV protease subunit HslV low > 113
Burkholderia phytofirmans PsJN 0.19 BPHYT_RS24555 membrane protein 0.61 BPHYT_RS01635 ATP-dependent protease subunit HslV — —
Cupriavidus basilensis FW507-4G11 0.16 RR42_RS03900 membrane protein 0.63 RR42_RS01060 peptidase low > 128
Pseudomonas putida KT2440 0.15 PP_4162 conserved membrane protein of unknown function 0.63 PP_5000 peptidase component of the ATP-dependent HslVU protease low > 96
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_19830 hypothetical protein 0.57 AO356_09455 ATP-dependent protease subunit HslV low > 104
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS09095 AI-2E family transporter 0.65 PFLU_RS01965 ATP-dependent protease subunit HslV low > 109
Pseudomonas fluorescens SBW25 0.15 PFLU_RS09095 AI-2E family transporter 0.65 PFLU_RS01965 ATP-dependent protease subunit HslV low > 109
Pseudomonas sp. RS175 0.15 PFR28_03068 Putative transport protein YdiK 0.57 PFR28_04999 ATP-dependent protease subunit HslV — —
Pseudomonas simiae WCS417 0.14 PS417_09040 hypothetical protein 0.65 PS417_01920 ATP-dependent protease subunit HslV low > 88
Pseudomonas fluorescens FW300-N2E2 0.14 Pf6N2E2_5882 Putative membrane protein 0.57 Pf6N2E2_3769 ATP-dependent protease HslV (EC 3.4.25.-) — —
Rhodopseudomonas palustris CGA009 0.13 TX73_002840 AI-2E family transporter 0.77 TX73_001600 ATP-dependent protease subunit HslV low > 86
Pseudomonas sp. S08-1 0.13 OH686_01920 Uncharacterized UPF0118 membrane protein 0.61 OH686_10095 ATP-dependent protease HslVU, peptidase subunit low > 80
Pseudomonas fluorescens FW300-N1B4 0.13 Pf1N1B4_3528 Putative membrane protein 0.64 Pf1N1B4_1552 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas fluorescens GW456-L13 0.13 PfGW456L13_2055 Putative membrane protein 0.57 PfGW456L13_289 ATP-dependent protease HslV (EC 3.4.25.-) — —
Pseudomonas fluorescens FW300-N2E3 0.13 AO353_01690 hypothetical protein 0.65 AO353_12430 ATP-dependent protease subunit HslV — —
Variovorax sp. OAS795 0.12 ABID97_RS22290 AI-2E family transporter 0.65 ABID97_RS06180 ATP-dependent protease subunit HslV low > 91
Pseudomonas stutzeri RCH2 0.12 Psest_2464 Predicted permease 0.60 Psest_3936 ATP-dependent protease HslVU, peptidase subunit low > 67
Marinobacter adhaerens HP15 0.12 HP15_593 protein belonging to uncharacterized protein family UPF0118 0.68 HP15_466 ATP-dependent protease peptidase subunit low > 73
Castellaniella sp019104865 MT123 0.11 ABCV34_RS06025 AI-2E family transporter 0.66 ABCV34_RS13415 ATP-dependent protease subunit HslV low > 48
Pantoea sp. MT58 0.11 IAI47_14150 AI-2E family transporter 0.61 IAI47_00850 ATP-dependent protease subunit HslV low > 76
Klebsiella michiganensis M5al 0.11 BWI76_RS19855 AI-2E family transporter 0.61 BWI76_RS00755 ATP-dependent protease subunit HslV low > 92
Dickeya dianthicola ME23 0.10 DZA65_RS13330 AI-2E family transporter YdiK 0.60 DZA65_RS21500 ATP-dependent protease subunit HslV low > 75
Escherichia coli ECOR27 0.10 NOLOHH_17745 ydiK AI-2E family transporter YdiK 0.62 NOLOHH_05880 hslV ATP-dependent protease subunit HslV — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.10 OHPLBJKB_02036 Putative transport protein YdiK 0.62 OHPLBJKB_04119 ATP-dependent protease subunit HslV low > 73
Escherichia coli BW25113 0.10 b1688 ydiK predicted inner membrane protein (NCBI) 0.62 b3932 hslV ATP-dependent protease peptidase subunit (NCBI) low > 76
Escherichia coli BL21 0.10 ECD_01657 UPF0118 family inner membrane protein 0.62 ECD_03817 peptidase component of the HslUV protease low > 60
Escherichia coli ECRC62 0.10 BNILDI_16535 ydiK AI-2E family transporter YdiK 0.62 BNILDI_05650 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECRC101 0.10 MCAODC_18185 ydiK AI-2E family transporter YdiK 0.62 MCAODC_04235 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECRC101 0.10 OKFHMN_27225 ydiK AI-2E family transporter YdiK 0.62 OKFHMN_13735 hslV ATP-dependent protease subunit HslV — —
Escherichia coli Nissle 1917 0.10 ECOLIN_RS09435 AI-2E family transporter YdiK 0.62 ECOLIN_RS22640 ATP-dependent protease subunit HslV — —
Escherichia coli ECRC99 0.10 KEDOAH_00885 ydiK AI-2E family transporter YdiK 0.62 KEDOAH_14425 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECRC98 0.10 JDDGAC_01800 ydiK AI-2E family transporter YdiK 0.62 JDDGAC_17360 hslV ATP-dependent protease subunit HslV — —
Escherichia fergusonii Becca 0.10 EFB2_02304 Putative transport protein YdiK 0.62 EFB2_04686 ATP-dependent protease subunit HslV low > 86
Escherichia coli ECRC102 0.10 NIAGMN_00840 ydiK AI-2E family transporter YdiK 0.62 NIAGMN_11490 hslV ATP-dependent protease subunit HslV — —
Escherichia coli ECOR38 0.10 HEPCGN_05610 ydiK AI-2E family transporter YdiK 0.62 HEPCGN_12380 hslV ATP-dependent protease subunit HslV low > 85
Pectobacterium carotovorum WPP14 0.10 HER17_RS20960 AI-2E family transporter 0.59 HER17_RS00855 ATP-dependent protease subunit HslV low > 75
Serratia liquefaciens MT49 0.10 IAI46_10470 AI-2E family transporter 0.62 IAI46_24570 ATP-dependent protease subunit HslV low > 86
Dickeya dadantii 3937 0.10 DDA3937_RS12800 AI-2E family transporter YdiK 0.60 DDA3937_RS00920 ATP-dependent protease subunit HslV low > 74
Dickeya dianthicola 67-19 0.09 HGI48_RS12865 AI-2E family transporter YdiK 0.60 HGI48_RS20455 ATP-dependent protease subunit HslV low > 71
Ralstonia sp. UNC404CL21Col 0.09 ABZR87_RS08310 AI-2E family transporter 0.58 ABZR87_RS05115 ATP-dependent protease subunit HslV low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.09 GFF3553 Putative membrane protein 0.56 GFF2314 ATP-dependent protease HslV (EC 3.4.25.-) low > 78

Not shown: 3 genomes with orthologs for Atu1739 only; 40 genomes with orthologs for Atu0044 only