Conservation of cofitness between Shewana3_2281 and Shewana3_1624 in Shewanella sp. ANA-3

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_2281 BadM/Rrf2 family transcriptional regulator (RefSeq) 1.0 Shewana3_1624 arginine decarboxylase (RefSeq) 0.67 11
Shewanella oneidensis MR-1 0.99 SO2263 Rrf2 family protein (NCBI ptt file) 0.99 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.94 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.86 Shew_1619 arginine decarboxylase (RefSeq) — —
Shewanella amazonensis SB2B 0.92 Sama_1292 Rrf2 family protein (RefSeq) 0.89 Sama_1963 arginine decarboxylase (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.70 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 0.55 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_03880 HTH-type transcriptional regulator IscR 0.70 CSW01_18235 arginine decarboxylase low > 62
Erwinia tracheiphila SCR3 0.68 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 LU632_RS05510 speA biosynthetic arginine decarboxylase low > 74
Rahnella sp. WP5 0.68 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.55 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Alteromonas macleodii MIT1002 0.68 MIT1002_02802 HTH-type transcriptional regulator IscR 0.35 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70
Serratia liquefaciens MT49 0.68 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.57 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Dickeya dadantii 3937 0.68 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.56 DDA3937_RS18535 biosynthetic arginine decarboxylase — —
Dickeya dianthicola 67-19 0.68 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.56 HGI48_RS18460 biosynthetic arginine decarboxylase — —
Dickeya dianthicola ME23 0.68 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.56 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Pantoea sp. MT58 0.67 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.56 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Pseudomonas putida KT2440 0.66 PP_0841 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR 0.44 PP_0567 Biosynthetic arginine decarboxylase low > 96
Pseudomonas stutzeri RCH2 0.66 Psest_1250 iron-sulfur cluster assembly transcription factor IscR 0.45 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.44 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas sp. S08-1 0.66 OH686_17470 iron-sulfur cluster assembly transcription factor IscR 0.45 OH686_07545 arginine decarboxylase low > 80
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_1236 transcriptional regulator, BadM/Rrf2 family 0.44 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.45 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas simiae WCS417 0.65 PS417_23205 transcriptional regulator 0.45 PS417_03005 arginine decarboxylase low > 88
Pseudomonas fluorescens SBW25 0.65 PFLU_RS24860 Fe-S cluster assembly transcriptional regulator IscR 0.45 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_15830 transcriptional regulator 0.45 AO353_13720 arginine decarboxylase low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_06650 transcriptional regulator 0.44 AO356_08155 arginine decarboxylase low > 104
Pseudomonas sp. RS175 0.64 PFR28_00285 HTH-type transcriptional regulator IscR 0.45 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Klebsiella michiganensis M5al 0.59 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.56 BWI76_RS24030 arginine decarboxylase low > 92
Escherichia coli BW25113 0.59 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.56 b2938 speA arginine decarboxylase (NCBI) 0.19 66
Escherichia coli ECRC98 0.59 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 JDDGAC_22935 speA biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC62 0.59 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 BNILDI_09755 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli BL21 0.59 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.56 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 61
Escherichia coli ECOR38 0.59 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli Nissle 1917 0.59 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.56 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 55
Escherichia coli ECRC100 0.59 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 OKFHMN_19305 speA biosynthetic arginine decarboxylase low > 80
Escherichia coli ECRC99 0.59 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 0.59 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.56 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia fergusonii Becca 0.59 EFB2_01359 HTH-type transcriptional regulator IscR 0.56 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli ECOR27 0.59 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli ECRC101 0.59 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.56 MCAODC_09825 speA biosynthetic arginine decarboxylase low > 87
Enterobacter sp. TBS_079 0.59 MPMX20_03412 HTH-type transcriptional regulator IscR 0.57 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF2436 Iron-sulfur cluster regulator IscR 0.56 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_866 Iron-sulfur cluster regulator IscR 0.44 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Enterobacter asburiae PDN3 0.58 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.56 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1458 transcriptional regulator, BadM/Rrf2 family 0.54 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) low > 40
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_4874 Iron-sulfur cluster regulator IscR 0.45 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3190 Iron-sulfur cluster regulator IscR 0.45 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Marinobacter adhaerens HP15 0.51 HP15_1487 transcriptional regulator, BadM/Rrf2 family 0.56 HP15_272 biosynthetic arginine decarboxylase low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.35 DVU0529 rrf2 Rrf2 protein (voordouw) 0.35 DVU0417 speA arginine decarboxylase (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.36 DvMF_1536 arginine decarboxylase (RefSeq) low > 51

Not shown: 18 genomes with orthologs for Shewana3_2281 only; 13 genomes with orthologs for Shewana3_1624 only