Conservation of cofitness between Sama_2008 and Sama_3278 in Shewanella amazonensis SB2B

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2008 cystathionine beta-lyase (RefSeq) 1.0 Sama_3278 threonine dehydratase (RefSeq) 0.82 17
Shewanella oneidensis MR-1 0.83 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.78 SO4344 ilvA threonine dehydratase (NCBI ptt file) 0.89 47
Shewanella sp. ANA-3 0.82 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.77 Shewana3_0359 threonine dehydratase (RefSeq) 0.91 15
Shewanella loihica PV-4 0.82 Shew_1789 cystathionine beta-lyase (RefSeq) 0.75 Shew_0293 threonine dehydratase (RefSeq) 0.96 16
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_08400 cystathionine beta-lyase 0.57 CSW01_00135 threonine ammonia-lyase, biosynthetic low > 62
Dickeya dadantii 3937 0.55 DDA3937_RS01815 cystathionine beta-lyase 0.58 DDA3937_RS20150 threonine ammonia-lyase, biosynthetic 0.88 20
Dickeya dianthicola 67-19 0.55 HGI48_RS01710 cystathionine beta-lyase 0.58 HGI48_RS20290 threonine ammonia-lyase, biosynthetic 0.78 21
Dickeya dianthicola ME23 0.55 DZA65_RS01785 cystathionine beta-lyase 0.56 DZA65_RS21330 threonine ammonia-lyase, biosynthetic 0.92 6
Pectobacterium carotovorum WPP14 0.54 HER17_RS19690 cystathionine beta-lyase 0.56 HER17_RS01080 threonine ammonia-lyase, biosynthetic 0.97 13
Serratia liquefaciens MT49 0.53 IAI46_21725 cystathionine beta-lyase 0.56 IAI46_24340 threonine ammonia-lyase, biosynthetic low > 86
Rahnella sp. WP5 0.52 EX31_RS08025 cystathionine beta-lyase 0.56 EX31_RS15010 threonine ammonia-lyase, biosynthetic low > 89
Escherichia fergusonii Becca 0.52 EFB2_00802 Cystathionine beta-lyase MetC 0.56 EFB2_04864 L-threonine dehydratase biosynthetic IlvA low > 86
Escherichia coli ECRC98 0.52 JDDGAC_22595 metC cystathionine beta-lyase 0.55 JDDGAC_18255 ilvA threonine ammonia-lyase, biosynthetic
Escherichia coli ECRC101 0.52 OKFHMN_18960 metC cystathionine beta-lyase 0.55 OKFHMN_14635 ilvA threonine ammonia-lyase, biosynthetic
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) 0.55 GFF2900 Threonine dehydratase biosynthetic (EC 4.3.1.19) low > 78
Escherichia coli ECRC99 0.52 KEDOAH_09185 metC cystathionine beta-lyase 0.55 KEDOAH_13515 ilvA threonine ammonia-lyase, biosynthetic
Escherichia coli ECRC102 0.52 NIAGMN_16725 metC cystathionine beta-lyase 0.55 NIAGMN_12390 ilvA threonine ammonia-lyase, biosynthetic
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17315 cystathionine beta-lyase 0.56 ECOLIN_RS21670 threonine ammonia-lyase, biosynthetic low > 52
Escherichia coli ECRC101 0.52 MCAODC_09475 metC cystathionine beta-lyase 0.55 MCAODC_05140 ilvA threonine ammonia-lyase, biosynthetic
Escherichia coli BL21 0.52 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.55 ECD_03650 l-threonine dehydratase, biosynthetic; also known as threonine deaminase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00693 Cystathionine beta-lyase MetC 0.55 OHPLBJKB_04281 L-threonine dehydratase biosynthetic IlvA low > 73
Escherichia coli ECRC62 0.52 BNILDI_00780 metC cystathionine beta-lyase 0.55 BNILDI_04755 ilvA threonine ammonia-lyase, biosynthetic
Escherichia coli ECOR27 0.52 NOLOHH_10735 metC cystathionine beta-lyase 0.55 NOLOHH_06770 ilvA threonine ammonia-lyase, biosynthetic low > 57
Escherichia coli ECOR38 0.52 HEPCGN_17825 metC cystathionine beta-lyase 0.55 HEPCGN_13345 ilvA threonine ammonia-lyase, biosynthetic low > 85
Escherichia coli BW25113 0.51 b3008 metC cystathionine beta-lyase (NCBI) 0.55 b3772 ilvA threonine dehydratase (NCBI) 0.95 3
Klebsiella michiganensis M5al 0.51 BWI76_RS24285 cystathionine beta-lyase 0.55 BWI76_RS00980 PLP-dependent threonine dehydratase 0.94 2
Enterobacter asburiae PDN3 0.51 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.55 EX28DRAFT_4444 threonine ammonia-lyase, biosynthetic, long form 0.90 11
Enterobacter sp. TBS_079 0.50 MPMX20_03852 Cystathionine beta-lyase MetC 0.55 MPMX20_04498 L-threonine dehydratase biosynthetic IlvA 0.96 2
Erwinia tracheiphila SCR3 0.49 LU632_RS20545 metC cystathionine beta-lyase 0.56 LU632_RS24395 ilvA threonine ammonia-lyase, biosynthetic 0.87 13
Pantoea sp. MT58 0.47 IAI47_03215 cystathionine beta-lyase 0.56 IAI47_01040 threonine ammonia-lyase, biosynthetic low > 76
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_24330 cystathionine beta-lyase 0.51 AO353_08485 threonine dehydratase low > 101
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11250 cystathionine beta-lyase 0.47 ABZR87_RS07360 threonine ammonia-lyase, biosynthetic 0.31 57
Variovorax sp. OAS795 0.43 ABID97_RS22430 cystathionine beta-lyase 0.47 ABID97_RS07000 threonine ammonia-lyase, biosynthetic low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) 0.49 GFF1379 Threonine dehydratase biosynthetic (EC 4.3.1.19) low > 90
Azospirillum sp. SherDot2 0.42 MPMX19_01339 Cystathionine beta-lyase MetC 0.49 MPMX19_02807 L-threonine dehydratase biosynthetic IlvA low > 112
Variovorax sp. SCN45 0.41 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) 0.47 GFF5246 Threonine dehydratase biosynthetic (EC 4.3.1.19) low > 127
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0607 cystathionine beta-lyase 0.53 Psyr_1672 L-threonine ammonia-lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0607 cystathionine beta-lyase 0.53 Psyr_1672 L-threonine ammonia-lyase low > 86
Ralstonia solanacearum PSI07 0.39 RPSI07_RS02185 cystathionine beta-lyase 0.48 RPSI07_RS21810 threonine ammonia-lyase, biosynthetic low > 81
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS20555 cystathionine beta-lyase 0.46 RALBFv3_RS11395 threonine ammonia-lyase, biosynthetic low > 76
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS30610 cystathionine beta-lyase 0.47 RR42_RS02315 threonine dehydratase low > 128
Ralstonia solanacearum UW163 0.38 UW163_RS18620 cystathionine beta-lyase 0.46 UW163_RS02190 threonine ammonia-lyase, biosynthetic
Paraburkholderia sabiae LMG 24235 0.38 QEN71_RS22165 cystathionine beta-lyase 0.48 QEN71_RS01985 threonine ammonia-lyase, biosynthetic low > 153
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS09190 cystathionine beta-lyase 0.48 BPHYT_RS11065 threonine dehydratase
Castellaniella sp019104865 MT123 0.36 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein 0.49 ABCV34_RS14460 threonine ammonia-lyase, biosynthetic low > 48
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS14995 cystathionine beta-lyase 0.47 HSERO_RS19510 threonine dehydratase low > 78
Ralstonia solanacearum GMI1000 0.34 RS_RS08260 cystathionine beta-lyase 0.49 RS_RS02225 threonine ammonia-lyase, biosynthetic
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS05585 cystathionine beta-lyase 0.48 A4249_RS00615 threonine ammonia-lyase, biosynthetic low > 48
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) 0.49 Ac3H11_2042 Threonine dehydratase biosynthetic (EC 4.3.1.19) low > 79
Acinetobacter radioresistens SK82 0.24 MPMX26_02724 Cystathionine beta-lyase 0.47 MPMX26_01278 L-threonine dehydratase biosynthetic IlvA low > 36

Not shown: 12 genomes with orthologs for Sama_2008 only; 19 genomes with orthologs for Sama_3278 only